Gene detail

Detail information of GWHGAAZE015858

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002321027.2	1.0166E-107	hypothetical protein POPTR_0014s12770g [Populus trichocarpa]
trEMBL	tr\|B9I9V1\|B9I9V1_POPTR	4E-108	Uncharacterized protein {ECO:0000313\|EMBL:EEE99342.2}
TAIR10	AT5G07900.1	6E-78	Mitochondrial transcription termination factor family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	60648586	60649707	+
GWHAAZE00000004	mRNA	60648586	60649707	+
GWHAAZE00000004	exon	60648586	60649707	+
GWHAAZE00000004	CDS	60648586	60649707	+

Transcript Sequence
>GWHTAAZE015874 ATGTTAACAATCCTATTCACTAAAAGAACACCGACCCCAAATCCCCTCACCCTCAATTCATTCACCATAAAATTCCTTATTTTCCAAAACAAATCCCTAATCACCACATTTTATTCCTCACAATCAGAATCCAATTTCATCGAACTTGATAAAAACCCACAAAAAGCAGAGCGAGTTCTAACCCTTTTCAGAACCCATGGATTCAGTGAAACCCAGATCTCAAGAGTGGTTAAAGTGCGCCCTACTATTCTTTTTTCAGATCCCAAGAAAACCCTAATTCCCAAGCTGGAGTTCTTTCGCTCCATAGGATTATCAAGAACCGATCTGCCAAGAATTGTGTCGTCTAATCCGGTTCTGTTAGGGAGGAGTTTAGCGAATCAGTTGATTCCTTGTCATAATTTCCTCAAAAATCTACTAATTCTAGATGAAAATGTTGTTAAGATGTTGAAGCGGGATTCGAGGATACTTCTTCATGATTTTGAGAATGTTACTGGTCCGAATATTAGTTCATTGAGTGAGATTGGAGTTCCTAAATCAGTAATTTCGTTCATGCTGTTTCGGTTTCCGACTATTGCTCATCAAAATCACGAGAAGTTTAAGAGGGCGGTTGAGGTTGTTATTGGAATGGGATTTAATCCGTTGAGGTCTATGTTCGTTCAAGCGGTTCAAGTTATTTGTGGAACGACTAAGATGACGTTGGATCGTAAATGGGCAGCGTATAGGAGTTGGGGTTTGTCCGATGACGAGATTCTAATGGCGTTTAGATCGCATCCGGTGTGCATGAATTTGTCCGAGGAGAAAATTACTAGGGGAATGGATTTTTTTGTGAACAAAATGGGTTGGGAGGCTGTGAAAGTGGCTAGGTGTTCGGCCGTACTTTTTTACAATTTGGAAAATAGGATCATTCCGAGGTGTAGAGTGATAAAAGTTCTGATATCGGAGGGAATTTTGAAGAAAGATGCAAGCTTGAGTACCTTTTTGATGCCTTCGGAAAATCAATTCTTGCAAAAGTTTGTGAGCAAATACGAAGACAAAGTTCCCAAGCTGCTAAATGTTTATCAAGGGAAGACGGTTCATTTGAAAAAAGGACTTCGATCCAAGGACCAACATGTGGGTAAATGA

Network for GWHGAAZE015858

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02536.15	mTERF	60	211	1.20E-19
PF02536.15	mTERF	126	335	1.60E-27

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	mTERF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003690	molecular_function	double-stranded DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.316
	SRR3591706	second leaf	6.646
	SRR3591707	mature leaf	4.710
	SRR3591708	Shoot apex	7.750
	SRR3591709	Stem	5.265
	SRR3591710	White floral bud	5.301
	SRR3591711	White flower	7.368
	SRR3591712	Green floral bud	12.356
	SRR3591713	Yellow flower	5.752
SRP173429	SRR8316895	Juvenile bud stage	3.612
	SRR8316896	Juvenile bud stage	5.406
	SRR8316897	Juvenile bud stage	2.160
	SRR8316894	Third green stage	3.672
	SRR8316900	Third green stage	9.099
	SRR8316901	Third green stage	8.667
	SRR8316898	Complete white stage	2.931
	SRR8316899	Complete white stage	12.252
	SRR8316903	Complete white stage	2.678
	SRR8316902	Silver flowering stage	2.036
	SRR8316904	Silver flowering stage	4.271
	SRR8316905	Silver flowering stage	1.646
	SRR8316906	Gold flowering stage	5.387
	SRR8316907	Gold flowering stage	2.713
	SRR8316908	Gold flowering stage	5.721
SRP132670	SRR6706286	Control	6.762
	SRR6706287	Light intensity 50%	6.457
	SRR6706288	Light intensity 20%	7.354
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.596
	CNS0095593	Slightly white alabastrum(diploid) 2	5.016
	CNS0095594	Slightly white alabastrum(diploid) 3	5.585
	CNS0095595	Whole white alabastrum(diploid) 2	4.770
	CNS0095596	Whole white alabastrum(diploid) 3	4.236
	CNS0095597	Whole white alabastrum(diploid) 4	4.540
	CNS0095598	Silvery flower (diploied) 1	3.031
	CNS0095599	Silvery flower (diploied) 2	4.699
	CNS0095600	Silvery flower (diploied) 3	5.108
	CNS0095601	Golden flower (diploid) 1	3.464
	CNS0095602	Golden flower (diploid) 2	5.907
	CNS0095603	Golden flower (diploid) 3	5.095
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.829
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.783
	CNS0095606	Slightly white alabastrum(tetraploid) 3	13.814
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.456
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.433
	CNS0095609	Whole white alabastrum(tetraploid) 3	10.505
	CNS0095610	Silvery flower (diploied) 1	8.312
	CNS0095611	Silvery flower (diploied) 2	9.576
	CNS0095612	Silvery flower (diploied) 3	5.844
	CNS0095613	Golden flower (tetraploid) 1	4.544
	CNS0095614	Golden flower (tetraploid) 2	6.063
	CNS0095615	Golden flower (tetraploid) 3	5.259
CRA001975	CRR073297	Stem 1	4.002
	CRR073298	Stem 2	5.427
	CRR073299	Stem 3	4.621
	CRR073300	Leaf 1	5.480
	CRR073301	Leaf 2	5.539
	CRR073302	Leaf 3	1.915
	CRR073303	Juvenile bud 1	3.759
	CRR073304	Juvenile bud 2	2.985
	CRR073305	Juvenile bud 3	3.491
	CRR073306	Third green 1	0.361
	CRR073307	Third green 2	0.087
	CRR073308	Third green 3	0.774
	CRR073309	Second white 1	1.549
	CRR073310	Second white 2	0.748
	CRR073311	Second white 3	0.261
	CRR073312	Silver flowering 1	0.316
	CRR073313	Silver flowering 2	0.770
	CRR073314	Silver flowering 3	1.116
	CRR073315	Gold flowering 1	1.885
	CRR073316	Gold flowering 2	1.913
	CRR073317	Gold flowering 3	1.180
	CRR073318	Tawny withering 1	3.444
	CRR073319	Tawny withering 2	1.513
	CRR073320	Tawny withering 3	3.547