Gene detail

Detail information of GWHGAAZE015919

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009336422.1	0	PREDICTED: probable L-ascorbate peroxidase 6, chloroplastic isoform X1 [Pyrus x bretschneideri]
Swissprot	tr\|Q42593\|APXT_ARATH	0	L-ascorbate peroxidase T, chloroplastic (Precursor)
trEMBL	tr\|I1JZ45\|I1JZ45_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA04G42720.1}
TAIR10	AT1G77490.1	1E-149	thylakoidal ascorbate peroxidase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	63189143	63194353	+
GWHAAZE00000004	mRNA	63189143	63194353	+
GWHAAZE00000004	exon	63189143	63189266	+
GWHAAZE00000004	exon	63189338	63189438	+
GWHAAZE00000004	exon	63189809	63189896	+
GWHAAZE00000004	exon	63190727	63190794	+
GWHAAZE00000004	exon	63191154	63191240	+
GWHAAZE00000004	exon	63191803	63191877	+
GWHAAZE00000004	exon	63191968	63192045	+
GWHAAZE00000004	exon	63192138	63192242	+
GWHAAZE00000004	exon	63193104	63193178	+
GWHAAZE00000004	exon	63194201	63194353	+
GWHAAZE00000004	CDS	63189143	63189266	+
GWHAAZE00000004	CDS	63189338	63189438	+
GWHAAZE00000004	CDS	63189809	63189896	+
GWHAAZE00000004	CDS	63190727	63190794	+
GWHAAZE00000004	CDS	63191154	63191240	+
GWHAAZE00000004	CDS	63191803	63191877	+
GWHAAZE00000004	CDS	63191968	63192045	+
GWHAAZE00000004	CDS	63192138	63192242	+
GWHAAZE00000004	CDS	63193104	63193178	+
GWHAAZE00000004	CDS	63194201	63194353	+

Transcript Sequence
>GWHTAAZE015935 CAGGTCCGTTTAGGATGGCATGATGCCGGTACATATAACAAGAATATCGAGGAGTGGCCACAAAGAGGTGGAGCTAATGGAAGTTTACGATTTGAAATTGAACAGAAACATGCAGCAAATGCTGGGCTTATTAATGCAATTAAACTTCTCCAGCCTATCAAAGACAAGTATCCGGGTGTGACTTATGCGGATTTATTCCAATTGGCCAGTGCTACTGCTGTGGAGGAGGCTGGGGGCCCGAAAATCCCAATGAAGTATGGAAGAGTAGATGTGTCTGGACCTGACCAATGTCCAGAAGAAGGGCGGCTGCCTGATGCTGGCCCTCCTTCACCTGCTTCTCATTTACGGGATGTCTTCTACAGGATGGGATTGAATGACAAGGAAATAGTTGCACTATCTGGTGCACACACATTGGGAAGGTCCAGACCAGAACGCAGTGGTTGGGGCAAACCAGAGACTAAATATACGAAAGATGGACCAGGAGCCCCGGGAGGACAGTCTTGGACAGCGCAGTGGCTAAAATTTGATAATTCCTACTTCAAGGATATCAAAGAAAAAAGGGACGAAGATCTACTGGTTTTACCAACAGATGCTGCTCTTTTTGAAGATCCATCATTTAAGGTATATGCTGAGAAATACGCTGAAGATCAGGAGGCATTTTCCAAGGATTATGCTGAAGCTCATGCCAAACTCAGCAACCTTGGAGCTAAATTTGATCCTCCGGAGGGTTTCTCACTATATGATGCTCCCACAACAGCTGCACCCGAGAAGTTTTCTGCGGCCAAGTACTCATCTAAGAAGAGAGAGCTATCGGATAATATGAAGCAGAAGATTCGAGCAGAGTATGAAGGATTGGGGGGAAGCCCAGATAAGCCTCTTCAATCCAACTACTTCCTTAATATCATTATTGTGATTGCTGTTTTGGCCGTTTTGACATATCTATTCGGAAACTAA

Network for GWHGAAZE015919

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00141.24	peroxidase	2	216	2.40E-43

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00434	E1.11.1.11	Metabolic pathways	map01100
		Ascorbate and aldarate metabolism	map00053
		Glutathione metabolism	map00480

Gene Ontology

GO term	Ontology	Name
GO:0006979	biological_process	response to oxidative stress
GO:0055114	biological_process	oxidation-reduction process
GO:0004601	molecular_function	peroxidase activity
GO:0020037	molecular_function	heme binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	45.839
	SRR3591706	second leaf	193.130
	SRR3591707	mature leaf	180.985
	SRR3591708	Shoot apex	59.587
	SRR3591709	Stem	30.668
	SRR3591710	White floral bud	37.521
	SRR3591711	White flower	61.173
	SRR3591712	Green floral bud	32.725
	SRR3591713	Yellow flower	63.261
SRP173429	SRR8316895	Juvenile bud stage	30.241
	SRR8316896	Juvenile bud stage	41.092
	SRR8316897	Juvenile bud stage	20.576
	SRR8316894	Third green stage	13.331
	SRR8316900	Third green stage	44.604
	SRR8316901	Third green stage	45.652
	SRR8316898	Complete white stage	17.437
	SRR8316899	Complete white stage	42.774
	SRR8316903	Complete white stage	29.740
	SRR8316902	Silver flowering stage	26.987
	SRR8316904	Silver flowering stage	33.784
	SRR8316905	Silver flowering stage	18.498
	SRR8316906	Gold flowering stage	70.016
	SRR8316907	Gold flowering stage	68.362
	SRR8316908	Gold flowering stage	74.468
SRP132670	SRR6706286	Control	33.611
	SRR6706287	Light intensity 50%	31.798
	SRR6706288	Light intensity 20%	35.393
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	33.078
	CNS0095593	Slightly white alabastrum(diploid) 2	33.416
	CNS0095594	Slightly white alabastrum(diploid) 3	30.858
	CNS0095595	Whole white alabastrum(diploid) 2	34.151
	CNS0095596	Whole white alabastrum(diploid) 3	31.669
	CNS0095597	Whole white alabastrum(diploid) 4	25.776
	CNS0095598	Silvery flower (diploied) 1	56.955
	CNS0095599	Silvery flower (diploied) 2	46.920
	CNS0095600	Silvery flower (diploied) 3	64.593
	CNS0095601	Golden flower (diploid) 1	48.413
	CNS0095602	Golden flower (diploid) 2	62.192
	CNS0095603	Golden flower (diploid) 3	63.978
	CNS0095604	Slightly white alabastrum(tetraploid) 1	31.142
	CNS0095605	Slightly white alabastrum(tetraploid) 2	33.395
	CNS0095606	Slightly white alabastrum(tetraploid) 3	44.080
	CNS0095607	Whole white alabastrum(tetraploid) 1	18.454
	CNS0095608	Whole white alabastrum(tetraploid) 2	20.056
	CNS0095609	Whole white alabastrum(tetraploid) 3	39.307
	CNS0095610	Silvery flower (diploied) 1	75.791
	CNS0095611	Silvery flower (diploied) 2	93.664
	CNS0095612	Silvery flower (diploied) 3	62.610
	CNS0095613	Golden flower (tetraploid) 1	45.903
	CNS0095614	Golden flower (tetraploid) 2	60.878
	CNS0095615	Golden flower (tetraploid) 3	38.431
CRA001975	CRR073297	Stem 1	26.108
	CRR073298	Stem 2	24.614
	CRR073299	Stem 3	27.172
	CRR073300	Leaf 1	19.934
	CRR073301	Leaf 2	17.606
	CRR073302	Leaf 3	18.264
	CRR073303	Juvenile bud 1	21.739
	CRR073304	Juvenile bud 2	19.843
	CRR073305	Juvenile bud 3	18.244
	CRR073306	Third green 1	13.328
	CRR073307	Third green 2	8.735
	CRR073308	Third green 3	8.851
	CRR073309	Second white 1	49.939
	CRR073310	Second white 2	39.841
	CRR073311	Second white 3	48.756
	CRR073312	Silver flowering 1	45.807
	CRR073313	Silver flowering 2	47.657
	CRR073314	Silver flowering 3	44.284
	CRR073315	Gold flowering 1	177.701
	CRR073316	Gold flowering 2	191.058
	CRR073317	Gold flowering 3	111.758
	CRR073318	Tawny withering 1	14.549
	CRR073319	Tawny withering 2	14.609
	CRR073320	Tawny withering 3	14.703