Gene detail

Detail information of GWHGAAZE016142

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011101230.1	5.71466E-71	PREDICTED: ethylene-responsive transcription factor ABR1-like [Sesamum indicum]
Swissprot	tr\|P93007\|EF112_ARATH	3E-37	Ethylene-responsive transcription factor ERF112
trEMBL	tr\|B9H7U8\|B9H7U8_POPTR	7E-71	AP2 domain-containing transcription factor family protein {ECO:0000313\|EMBL:EEE93708.2}
TAIR10	AT5G50080.1	2E-13	ethylene response factor 110

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	70182723	70184899	+
GWHAAZE00000004	mRNA	70182723	70184899	+
GWHAAZE00000004	exon	70182723	70183143	+
GWHAAZE00000004	exon	70184133	70184899	+
GWHAAZE00000004	CDS	70182723	70183143	+
GWHAAZE00000004	CDS	70184133	70184899	+

Transcript Sequence
>GWHTAAZE016162 ATGTGCTTGATAAAAGTGGCGAACAGAAAAGAAAGCTCCGGCGAGTATGTCAGGTTTCCGGCCGGCGAAATCACTGATGAGGGAGTGCCAGGTCAGCAAGACCAGCCACCGTCCATTCCGCCGGAGATTGATGATTTTGCCCGGTCCGGCGAGATGTCAGCGATGGTGACGGCGCTGACACGTGTGGTATCAGGGGAGAGGCGTGGTGGTGAAACGGCGCCGTTTTATCAAATGGGGTCTGGGTTTAATCAGAGTTTGAATTCACCTTCTTCTACTACTTACTCATCTTCAAGTTCAGGGCAGAAGAGAGGGAGAGAAGAAGAGTGTGTTATTAGTCAAGTTGGGGAGCAACAATTTCCATTTCAAAGGGTTTATAGAGATTTTGGAGGTGGTGGAGATTCATCTTCTTCTATTACATCTGTAACAGAGGAAGTTACAAGTAGCATTGTAACACCAACCCCCACCATCCCACAAACTTCATCATCAACACCACAAGAAGAAACCGGGGAGAGAAGAAGAAGATACAGAGGAGTGAGACAAAGGCCATGGGGTAAATGGGCAGCTGAAATAAGGGACCCACACAAGGCTGCTAGGGTTTGGTTAGGTACATTTGACACCGCTGAAGCTGCAGCGAGAGCCTATGATGAAGCTGCTCTAAGATTCAGAGGAAATAGAGCCAAACTCAACTTCCCTGAAAATGTAAGGCTCCTTCCTCCACCACTACCTCAGCCACCCCAATTGGCGGTTTCCACCCCTCCGGCAGCCCTTTTTCCGGCAAGCCATTTGCCAGTTTCGCATTTTTCAACAACCCATTTGAATTTTCCAGCGACCCAATTGCCACCACCAGCAGTCTTCCATGCCAAGGATTACTGGGATTACTCTCAGCTATTACAGAGTGGCAGTGAATTTCAATGGGATCAAAGGCAGCAACCCGCGAATTTGTTTGATCAAATGTATTATCATCCTTCTTCATCAGTGGCTTCATTACAACATTCACAATCATTCAATTCATCTTCTTCGTCTTCGGTTCCTTCTTCTTTACCACCCCCATCTAATCCTATGTTTTTCTCCGATCAACAAACGGGATTTTCATGGCCTTCGGAAAGTCAAAGTCAGGGTGGTGGGTCAGATTTTCAGACAGGGCCGTCCACCGGTGGTTCCGGCCACTTCCCTCCCTCTTCCAGTTGA

Network for GWHGAAZE016142

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00847.21	AP2	174	223	7.60E-15

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	AP2/ERF-ERF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003700	molecular_function	DNA-binding transcription factor activity
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.608
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.713
	SRR3591708	Shoot apex	0.180
	SRR3591709	Stem	0.802
	SRR3591710	White floral bud	26.066
	SRR3591711	White flower	108.014
	SRR3591712	Green floral bud	3.330
	SRR3591713	Yellow flower	74.269
SRP173429	SRR8316895	Juvenile bud stage	0.129
	SRR8316896	Juvenile bud stage	0.285
	SRR8316897	Juvenile bud stage	0.090
	SRR8316894	Third green stage	0.687
	SRR8316900	Third green stage	1.512
	SRR8316901	Third green stage	1.391
	SRR8316898	Complete white stage	10.038
	SRR8316899	Complete white stage	5.975
	SRR8316903	Complete white stage	21.566
	SRR8316902	Silver flowering stage	28.210
	SRR8316904	Silver flowering stage	30.210
	SRR8316905	Silver flowering stage	13.338
	SRR8316906	Gold flowering stage	39.698
	SRR8316907	Gold flowering stage	48.398
	SRR8316908	Gold flowering stage	50.871
SRP132670	SRR6706286	Control	5.237
	SRR6706287	Light intensity 50%	5.766
	SRR6706288	Light intensity 20%	3.695
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.544
	CNS0095593	Slightly white alabastrum(diploid) 2	0.683
	CNS0095594	Slightly white alabastrum(diploid) 3	0.618
	CNS0095595	Whole white alabastrum(diploid) 2	1.114
	CNS0095596	Whole white alabastrum(diploid) 3	0.640
	CNS0095597	Whole white alabastrum(diploid) 4	0.889
	CNS0095598	Silvery flower (diploied) 1	6.739
	CNS0095599	Silvery flower (diploied) 2	8.651
	CNS0095600	Silvery flower (diploied) 3	35.706
	CNS0095601	Golden flower (diploid) 1	7.259
	CNS0095602	Golden flower (diploid) 2	19.207
	CNS0095603	Golden flower (diploid) 3	17.597
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.312
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.079
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.466
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.482
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.441
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.756
	CNS0095610	Silvery flower (diploied) 1	43.044
	CNS0095611	Silvery flower (diploied) 2	30.899
	CNS0095612	Silvery flower (diploied) 3	59.375
	CNS0095613	Golden flower (tetraploid) 1	34.608
	CNS0095614	Golden flower (tetraploid) 2	30.493
	CNS0095615	Golden flower (tetraploid) 3	36.134
CRA001975	CRR073297	Stem 1	0.201
	CRR073298	Stem 2	0.974
	CRR073299	Stem 3	0.182
	CRR073300	Leaf 1	3.384
	CRR073301	Leaf 2	2.787
	CRR073302	Leaf 3	3.260
	CRR073303	Juvenile bud 1	6.211
	CRR073304	Juvenile bud 2	11.741
	CRR073305	Juvenile bud 3	4.264
	CRR073306	Third green 1	77.797
	CRR073307	Third green 2	44.179
	CRR073308	Third green 3	62.455
	CRR073309	Second white 1	36.056
	CRR073310	Second white 2	40.505
	CRR073311	Second white 3	25.279
	CRR073312	Silver flowering 1	29.460
	CRR073313	Silver flowering 2	21.305
	CRR073314	Silver flowering 3	23.181
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	1.085
	CRR073317	Gold flowering 3	0.014
	CRR073318	Tawny withering 1	1.396
	CRR073319	Tawny withering 2	5.356
	CRR073320	Tawny withering 3	0.178