Gene detail

Detail information of GWHGAAZE016218

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009624664.1	1.525E-166	PREDICTED: argininosuccinate lyase, chloroplastic [Nicotiana tomentosiformis]
Swissprot	tr\|Q9LEU8\|ARLY_ARATH	2E-143	Argininosuccinate lyase, chloroplastic (Precursor)
trEMBL	tr\|M1AJK7\|M1AJK7_SOLTU	3E-162	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400024171}
TAIR10	AT5G10920.1	3E-117	L-Aspartase-like family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	71787702	71792778	+
GWHAAZE00000004	mRNA	71787702	71792778	+
GWHAAZE00000004	exon	71787702	71788046	+
GWHAAZE00000004	exon	71789647	71789910	+
GWHAAZE00000004	exon	71790638	71790754	+
GWHAAZE00000004	exon	71791823	71791971	+
GWHAAZE00000004	exon	71792634	71792778	+
GWHAAZE00000004	CDS	71787702	71788046	+
GWHAAZE00000004	CDS	71789647	71789910	+
GWHAAZE00000004	CDS	71790638	71790754	+
GWHAAZE00000004	CDS	71791823	71791971	+
GWHAAZE00000004	CDS	71792634	71792778	+

Transcript Sequence
>GWHTAAZE016238 ATGGACTCTACTACGTTCGCTGCTTCTTCTTCTTCTACAATTAGCCAATTTTTCTCACCATCCAAACAGTCCCTTCCCATTTCCAAACCTCACCAATTCTCCCTCCCCCACAAAAATAAAAGCAATCGAAGCATTCCAGGAGGACCACGGTTACTCTCCTGCGCCGCGCAACAGATGAATAATAATCCCACTCCGGCGAAGGAGGCGAAGCTATGGGGTGGCAGGTTCGAAGAGGGAGTAACCGATGCAGTGGAGAGGTTTACCGAATCAATTTCATTCGATAAAGCTCTATTCAAGCATGATATCATGGGTAGTCGAGCTCATGCCTCGATGCTTGCTCACCAGGGATTGATTAGCAACAGCGATAAGGATAGTATTTTCAAAGGCCTGAGTCAGATTGAGAGACAAATTGAAGCTGGTGAGTTTGTTTGGCGGACAGACAGAGAGGATGTGCACATGAACATTGAAGCAGCACTTACGGATTTGGTCGGTGAACCCGCGAAGAAACTTCATACAGCTAGGAGTCGAAATGATCAAGTTTCAACTGATTTTCGCCTGTGGTGTAGGGATGCTATCGATACCATTATTCAATGCATTAAGCATCTTCAGGTGGCTCTGGTGACCCTTGCTGTGAAGAATGACGGATTGATTATTCCTGGTTATACACATTTACAGAGGGCGCAACCTGTTCTACTGCAACATCTTATCTTAGCTTATGTTGAGCAGCTTGAACGTGATGCTGGCCGCTTAGTTGATTGCAGAGTTAGGTTGAATAATTGCCCCTTAGGCGCATGTGCATTAGCTGGCACTGGCCTTCCCATAGATAGGTTTATGACTTCTGATGCTTTGGGATTCACCGCTCCAATGAGAAACAGTTTCGACCGAGATTTTGTTTTGGAGCTTCTTTCAGCTAATTCCATCACAGCCATTCATCTTTCTCGCTCGGCTAAGAATGGGTATTGTGGGCATCAGAGGAATTTGGCTTTATCACTCCTAGCGACTCTGTTTCACTGGAAGTAG

Network for GWHGAAZE016218

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00206.21	Lyase_1	74	317	1.10E-44

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01755	argH, ASL	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Biosynthesis of amino acids	map01230
		Alanine, aspartate and glutamate metabolism	map00250
		Arginine biosynthesis	map00220

Gene Ontology

GO term	Ontology	Name
GO:0042450	biological_process	arginine biosynthetic process via ornithine
GO:0004056	molecular_function	argininosuccinate lyase activity
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.979
	SRR3591706	second leaf	5.140
	SRR3591707	mature leaf	4.275
	SRR3591708	Shoot apex	7.600
	SRR3591709	Stem	4.288
	SRR3591710	White floral bud	5.126
	SRR3591711	White flower	6.637
	SRR3591712	Green floral bud	7.528
	SRR3591713	Yellow flower	7.020
SRP173429	SRR8316895	Juvenile bud stage	7.691
	SRR8316896	Juvenile bud stage	7.581
	SRR8316897	Juvenile bud stage	3.028
	SRR8316894	Third green stage	5.338
	SRR8316900	Third green stage	10.584
	SRR8316901	Third green stage	8.693
	SRR8316898	Complete white stage	2.133
	SRR8316899	Complete white stage	6.745
	SRR8316903	Complete white stage	3.165
	SRR8316902	Silver flowering stage	1.901
	SRR8316904	Silver flowering stage	2.204
	SRR8316905	Silver flowering stage	1.140
	SRR8316906	Gold flowering stage	4.446
	SRR8316907	Gold flowering stage	5.570
	SRR8316908	Gold flowering stage	10.230
SRP132670	SRR6706286	Control	12.804
	SRR6706287	Light intensity 50%	13.622
	SRR6706288	Light intensity 20%	14.698
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.385
	CNS0095593	Slightly white alabastrum(diploid) 2	4.028
	CNS0095594	Slightly white alabastrum(diploid) 3	4.296
	CNS0095595	Whole white alabastrum(diploid) 2	3.531
	CNS0095596	Whole white alabastrum(diploid) 3	5.253
	CNS0095597	Whole white alabastrum(diploid) 4	4.049
	CNS0095598	Silvery flower (diploied) 1	4.778
	CNS0095599	Silvery flower (diploied) 2	2.768
	CNS0095600	Silvery flower (diploied) 3	9.344
	CNS0095601	Golden flower (diploid) 1	2.583
	CNS0095602	Golden flower (diploid) 2	5.828
	CNS0095603	Golden flower (diploid) 3	5.131
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.030
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.178
	CNS0095606	Slightly white alabastrum(tetraploid) 3	10.128
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.730
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.424
	CNS0095609	Whole white alabastrum(tetraploid) 3	9.258
	CNS0095610	Silvery flower (diploied) 1	11.234
	CNS0095611	Silvery flower (diploied) 2	12.484
	CNS0095612	Silvery flower (diploied) 3	7.057
	CNS0095613	Golden flower (tetraploid) 1	5.936
	CNS0095614	Golden flower (tetraploid) 2	9.398
	CNS0095615	Golden flower (tetraploid) 3	10.729
CRA001975	CRR073297	Stem 1	10.464
	CRR073298	Stem 2	9.379
	CRR073299	Stem 3	8.841
	CRR073300	Leaf 1	8.137
	CRR073301	Leaf 2	9.180
	CRR073302	Leaf 3	7.466
	CRR073303	Juvenile bud 1	7.843
	CRR073304	Juvenile bud 2	6.171
	CRR073305	Juvenile bud 3	5.699
	CRR073306	Third green 1	0.894
	CRR073307	Third green 2	0.889
	CRR073308	Third green 3	0.726
	CRR073309	Second white 1	2.132
	CRR073310	Second white 2	1.243
	CRR073311	Second white 3	2.144
	CRR073312	Silver flowering 1	0.793
	CRR073313	Silver flowering 2	1.912
	CRR073314	Silver flowering 3	0.917
	CRR073315	Gold flowering 1	2.495
	CRR073316	Gold flowering 2	11.398
	CRR073317	Gold flowering 3	4.767
	CRR073318	Tawny withering 1	5.294
	CRR073319	Tawny withering 2	2.306
	CRR073320	Tawny withering 3	5.405