Gene detail

Detail information of GWHGAAZE016312

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002285696.1	PREDICTED: glucose-6-phosphate isomerase 1, chloroplastic [Vitis vinifera]
Swissprot	tr\|Q8H103\|G6PIP_ARATH	Glucose-6-phosphate isomerase 1, chloroplastic (Precursor)
trEMBL	tr\|F6H116\|F6H116_VITVI	Glucose-6-phosphate isomerase {ECO:0000256\|RuleBase:RU000612}
TAIR10	AT4G24620.2	phosphoglucose isomerase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	73431649	73450947	+
GWHAAZE00000004	mRNA	73431649	73450947	+
GWHAAZE00000004	exon	73431649	73432203	+
GWHAAZE00000004	exon	73438743	73438808	+
GWHAAZE00000004	exon	73439127	73439249	+
GWHAAZE00000004	exon	73439506	73439604	+
GWHAAZE00000004	exon	73439710	73439793	+
GWHAAZE00000004	exon	73440821	73440964	+
GWHAAZE00000004	exon	73441071	73441136	+
GWHAAZE00000004	exon	73441974	73442042	+
GWHAAZE00000004	exon	73442142	73442249	+
GWHAAZE00000004	exon	73443281	73443333	+
GWHAAZE00000004	exon	73443418	73443556	+
GWHAAZE00000004	exon	73444362	73444518	+
GWHAAZE00000004	exon	73444723	73444801	+
GWHAAZE00000004	exon	73450743	73450947	+
GWHAAZE00000004	CDS	73431649	73432203	+
GWHAAZE00000004	CDS	73438743	73438808	+
GWHAAZE00000004	CDS	73439127	73439249	+
GWHAAZE00000004	CDS	73439506	73439604	+
GWHAAZE00000004	CDS	73439710	73439793	+
GWHAAZE00000004	CDS	73440821	73440964	+
GWHAAZE00000004	CDS	73441071	73441136	+
GWHAAZE00000004	CDS	73441974	73442042	+
GWHAAZE00000004	CDS	73442142	73442249	+
GWHAAZE00000004	CDS	73443281	73443333	+
GWHAAZE00000004	CDS	73443418	73443556	+
GWHAAZE00000004	CDS	73444362	73444518	+
GWHAAZE00000004	CDS	73444723	73444801	+
GWHAAZE00000004	CDS	73450743	73450947	+

Transcript Sequence
>GWHTAAZE016332 ATGGCTTCAATTTCAGGCCTATATTCATCATCATCAACTTTCAAACCGGAGAAATTCATCTCGAAAGTATCCTCAATTACTTCACTGTTACCAATTCGGAGAGAATCGATCGTGATTTCGAACCCATCGAAGCTCGCCGATCGGAGTTCGAGGTTTTCGTGCTATTCGGTGGCGCGTGAGGTGCCGGCGAGTATTTCGAAGAGTAATGATGGAGTTCCGAAGTCAACGTTAGGGTTAGAGAAGGACTCGAAGGCGCTGTGGAGGAGATACGTGGATTGGTTGTATCAGCATAAGGAGTTAGGGCTTTATTTGGATGTCAGTCGGATTGGATTTACGGATGAGTTCGTGGAGGAGATGGAGCCAAGATTTCAAGCGGCGTTTCGAGCTATGGAGGAGCTTGAGAAAGGAGCGATTGCGAATCCGGATGAAGGCCGAATGGTAGGGCATTACTGGCTTAGAAGCCCCAAGTTAGCGCCGAATTCGTTTTTGAGGTTGCAGATTGAGAATGCACTTGAAGCTGTGTGCAAGTTCGCGGACGAAGTCGTCAGTGGTAAGGCATTCAAGGAGACGGCTCAAAAGTTATCTTATTCGTACCCTTGTAATTCTATCAACAATCTTAGGATTAAGCCTCCATCTTCTGCAGAAGGGCGCTTTACACAAATACTTTCTGTTGGAATTGGAGGTTCAGCTCTTGGACCACAATTTGTTGCAGAGGCATTGGCTCCTGATAATCCACCTCTTAAGATAAGGTTCATTGACAATACAGATCCAGCTGGAATTGATCATCAAATTGCACAGCTTGGCTCTGAGCTGGCATCGACGCTTGTTATAGTGGTTTCAAAGAGTGGAGGAACTCCAGAAACTAGAAATGGTTTATTGGAAGTACAGAAGGCATTTCGTGAAGCTGGCCTGGATTTTGCAAAACAGGGTGTTGCCATTACACAAGAGAATTCCTTACTAGACAACACTGCAAGAATTGAGGGCTGGTTATCTAGATTTCCCATGTTTGACTGGGTGGGTGGTAGAACTTCTGAAATGTCTGCAGTTGGTTTACTTGCAGCAGCGCTTCAGGGAATTGACATAAAAGAAATGCTTGCTGGTGCAGCATTGATGGATGATGCAAACAGGACCACAGTGGTGAAAAACAACCCTGCAGCATTGCTGGCTTTGTGCTGGTATTGGGCTTCTGGTGGCCTAGGACTGAAGGATATGGTTATCCTTCCTTACAAGGATAGCCTACTATTATTTAGTAGGTATTTACAGCAGCTGGTCATGGAATCACTTGGGAAGGAGTTTGACCTTGATGGCAATCGGGTTAATCAAGGACTTACCGTCTATGGAAATAAAGGGAGTACCGATCAGCATGCCTACATCCAACAACTGAGAGAGGGTGTGCATAACTTCTTTGCGACGTTCATTGAAGTTTTACGCGATAGGCCCCCTGGCCATGATTGGGAGCTTGAACCTGGGGTCACCTGTGGTGACTACCTTTTTGGAATGCTACAGGGGACCAGGTCGGCTTTATATGCTAACGACAGGGAGTCCATAACAGTCACCGTGCAAGAAGTGACACCTAAATCAGTGGGGGCCCTAATTGCACTCTATGAGCGAGCAGTTGGTATTTATGCCTCACTGGTCAACGTTAATGCTTACCATCAACCTGGTGTGGAAGCTGGGAAAAAAGCAGCAGGAGAAGTATTAGCTCTTCAAAAGCGGGTTCTCTCGGTACTCAATGAAGCCAGACCAACGTCGGAGCAACAATTTCATATTGATTCCCGAATCAAATATTTCAGTAGTTACGGGGAAGCATCGACCAAACCCCCAATCTTCTTCCCTTCGCTCGTCGGCTCTTACGATTCGTCGTCATCGGGATTTTTGCCGATCAAGAGGAGCAAAAATTGTGGCCAATCGTCGATCGGAGAGCATCAATTGAAGGATGAGGTCTAG

Network for GWHGAAZE016312

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00342.20	PGI	216	477	4.20E-44
PF00342.20	PGI	508	568	3.70E-09

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01810	GPI, pgi	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Glycolysis / Gluconeogenesis	map00010
		Pentose phosphate pathway	map00030
		Starch and sucrose metabolism	map00500
		Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

GO term	Ontology	Name
GO:0006094	biological_process	gluconeogenesis
GO:0006096	biological_process	glycolytic process
GO:0004347	molecular_function	glucose-6-phosphate isomerase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	92.712
	SRR3591706	second leaf	72.665
	SRR3591707	mature leaf	55.530
	SRR3591708	Shoot apex	94.181
	SRR3591709	Stem	58.853
	SRR3591710	White floral bud	68.680
	SRR3591711	White flower	61.589
	SRR3591712	Green floral bud	74.364
	SRR3591713	Yellow flower	50.479
SRP173429	SRR8316895	Juvenile bud stage	46.635
	SRR8316896	Juvenile bud stage	51.167
	SRR8316897	Juvenile bud stage	35.681
	SRR8316894	Third green stage	25.866
	SRR8316900	Third green stage	75.302
	SRR8316901	Third green stage	66.985
	SRR8316898	Complete white stage	25.359
	SRR8316899	Complete white stage	75.314
	SRR8316903	Complete white stage	39.691
	SRR8316902	Silver flowering stage	25.505
	SRR8316904	Silver flowering stage	33.335
	SRR8316905	Silver flowering stage	17.040
	SRR8316906	Gold flowering stage	55.562
	SRR8316907	Gold flowering stage	52.941
	SRR8316908	Gold flowering stage	74.010
SRP132670	SRR6706286	Control	96.710
	SRR6706287	Light intensity 50%	91.522
	SRR6706288	Light intensity 20%	102.868
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	49.293
	CNS0095593	Slightly white alabastrum(diploid) 2	49.371
	CNS0095594	Slightly white alabastrum(diploid) 3	44.306
	CNS0095595	Whole white alabastrum(diploid) 2	49.376
	CNS0095596	Whole white alabastrum(diploid) 3	45.246
	CNS0095597	Whole white alabastrum(diploid) 4	47.815
	CNS0095598	Silvery flower (diploied) 1	56.241
	CNS0095599	Silvery flower (diploied) 2	56.318
	CNS0095600	Silvery flower (diploied) 3	73.433
	CNS0095601	Golden flower (diploid) 1	49.253
	CNS0095602	Golden flower (diploid) 2	67.664
	CNS0095603	Golden flower (diploid) 3	66.910
	CNS0095604	Slightly white alabastrum(tetraploid) 1	75.794
	CNS0095605	Slightly white alabastrum(tetraploid) 2	66.479
	CNS0095606	Slightly white alabastrum(tetraploid) 3	141.924
	CNS0095607	Whole white alabastrum(tetraploid) 1	46.123
	CNS0095608	Whole white alabastrum(tetraploid) 2	45.671
	CNS0095609	Whole white alabastrum(tetraploid) 3	108.466
	CNS0095610	Silvery flower (diploied) 1	90.490
	CNS0095611	Silvery flower (diploied) 2	116.829
	CNS0095612	Silvery flower (diploied) 3	95.373
	CNS0095613	Golden flower (tetraploid) 1	53.760
	CNS0095614	Golden flower (tetraploid) 2	89.977
	CNS0095615	Golden flower (tetraploid) 3	72.279
CRA001975	CRR073297	Stem 1	91.267
	CRR073298	Stem 2	89.622
	CRR073299	Stem 3	92.524
	CRR073300	Leaf 1	92.549
	CRR073301	Leaf 2	86.832
	CRR073302	Leaf 3	103.998
	CRR073303	Juvenile bud 1	98.658
	CRR073304	Juvenile bud 2	85.554
	CRR073305	Juvenile bud 3	106.231
	CRR073306	Third green 1	56.421
	CRR073307	Third green 2	40.007
	CRR073308	Third green 3	46.834
	CRR073309	Second white 1	48.274
	CRR073310	Second white 2	35.260
	CRR073311	Second white 3	36.236
	CRR073312	Silver flowering 1	43.700
	CRR073313	Silver flowering 2	48.785
	CRR073314	Silver flowering 3	46.174
	CRR073315	Gold flowering 1	34.488
	CRR073316	Gold flowering 2	56.013
	CRR073317	Gold flowering 3	43.717
	CRR073318	Tawny withering 1	76.478
	CRR073319	Tawny withering 2	54.957
	CRR073320	Tawny withering 3	95.439