Gene detail

Detail information of GWHGAAZE016367

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010647310.1	2.10148E-82	PREDICTED: homeobox-leucine zipper protein HAT22 isoform X3 [Vitis vinifera]
Swissprot	tr\|P46604\|HAT22_ARATH	5E-73	Homeobox-leucine zipper protein HAT22
trEMBL	tr\|A5B626\|A5B626_VITVI	1E-82	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN60988.1}
TAIR10	AT4G37790.1	4E-60	Homeobox-leucine zipper protein family

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	74908085	74909393	-
GWHAAZE00000004	mRNA	74908085	74909393	-
GWHAAZE00000004	exon	74908974	74909393	-
GWHAAZE00000004	exon	74908772	74908851	-
GWHAAZE00000004	exon	74908085	74908319	-
GWHAAZE00000004	CDS	74908974	74909393	-
GWHAAZE00000004	CDS	74908772	74908851	-
GWHAAZE00000004	CDS	74908085	74908319	-

Transcript Sequence
>GWHTAAZE016387 ATGGCTTTTGAGAACATTTGTAACACTGGCCTGAGTCTTGGATTAGGCTCTAAAGAAACACAAAAAGATCATTTTGATCATCAACAAGAGAATAAGAAATTCTATCATCATTTATTCCCTTCCCTTGCATTAGGCTCTTCTTCGACACGAGTGATCGATACAAGAAAATTGCACGCCAATTTGAGTCAACGCGCGTCTCCAATTAGCGCGGGGTCATCTTTTTCAAACTCTAGTGTGAAGAGGGAGAGAGATGTATTTAGTGGCGGGGAGGAATTAATAGAGGTGGAAAAAAGAGAGTCTTCAAAGGTAATTAGTGATGATCAAGATGAAGAAGTTGGTGCAAGAAAGAAACTTAGATTGACAAAAGAGCAATCTATCATTTTAGAAGAAAGTTTCAAAGAACACAACTCTCTCAATCCTAAGCAAAAGCATGCTTTGGCAAAAAGGTTGAATCTAAGGGCAAGACAAGTAGAAGTATGGTTTCAAAACAGGAGAGCCAGGACTAAGTTGAAGCAAACTGAAGTGGACTGTGAGTTGCTAAAGAAGTGCTGTGAAAATTTATCACAAGAGAACCGAAGGCTACAAAAGGAGCTGCAAGAGCTCAAAGCATTCAAACAAACGGCACCGTTTTATATGCAGATGCCGGCATCCACACTCACCATGTGCCCTTCTTGCGAGAGAATCAGTAGCAAAAAATCACCAAAATCTACTTTTCCAATCACAAGAAAGACACAA

Network for GWHGAAZE016367

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00046.30	Homeodomain	115	169	1.50E-15
PF02183.19	HALZ	171	204	9.50E-10

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	HB-HD-ZIP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003677	molecular_function	DNA binding
GO:0043565	molecular_function	sequence-specific DNA binding
GO:0003700	molecular_function	DNA-binding transcription factor activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.294
	SRR3591706	second leaf	0.536
	SRR3591707	mature leaf	0.405
	SRR3591708	Shoot apex	1.439
	SRR3591709	Stem	4.127
	SRR3591710	White floral bud	0.043
	SRR3591711	White flower	0.187
	SRR3591712	Green floral bud	0.255
	SRR3591713	Yellow flower	1.030
SRP173429	SRR8316895	Juvenile bud stage	0.202
	SRR8316896	Juvenile bud stage	0.289
	SRR8316897	Juvenile bud stage	0.146
	SRR8316894	Third green stage	0.366
	SRR8316900	Third green stage	0.142
	SRR8316901	Third green stage	0.209
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.070
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.698
	SRR8316904	Silver flowering stage	0.289
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.196
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	1.342
SRP132670	SRR6706286	Control	0.166
	SRR6706287	Light intensity 50%	0.000
	SRR6706288	Light intensity 20%	0.046
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.253
	CNS0095593	Slightly white alabastrum(diploid) 2	0.461
	CNS0095594	Slightly white alabastrum(diploid) 3	0.197
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.427
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.424
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	2.172
	CNS0095603	Golden flower (diploid) 3	2.099
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.467
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.099
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.081
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.205
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (diploied) 1	0.605
	CNS0095611	Silvery flower (diploied) 2	0.885
	CNS0095612	Silvery flower (diploied) 3	0.007
	CNS0095613	Golden flower (tetraploid) 1	0.584
	CNS0095614	Golden flower (tetraploid) 2	1.604
	CNS0095615	Golden flower (tetraploid) 3	0.320
CRA001975	CRR073297	Stem 1	0.438
	CRR073298	Stem 2	0.838
	CRR073299	Stem 3	2.150
	CRR073300	Leaf 1	0.159
	CRR073301	Leaf 2	0.236
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.163
	CRR073308	Third green 3	0.099
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.179
	CRR073315	Gold flowering 1	0.049
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.115
	CRR073318	Tawny withering 1	0.381
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.057