Gene detail

Detail information of GWHGAAZE016368

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP00994.1	0	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9M439\|BCAT2_ARATH	0	Branched-chain-amino-acid aminotransferase 2, chloroplastic (Precursor)
trEMBL	tr\|A0A068TYJ1\|A0A068TYJ1_COFCA	0	Branched-chain-amino-acid aminotransferase {ECO:0000256\|RuleBase:RU004517}
TAIR10	AT1G10070.2	2E-142	branched-chain amino acid transaminase 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	75049022	75051620	+
GWHAAZE00000004	mRNA	75049022	75051620	+
GWHAAZE00000004	exon	75049022	75049231	+
GWHAAZE00000004	exon	75049447	75049623	+
GWHAAZE00000004	exon	75049781	75049912	+
GWHAAZE00000004	exon	75050072	75050170	+
GWHAAZE00000004	exon	75050528	75050644	+
GWHAAZE00000004	exon	75050936	75051031	+
GWHAAZE00000004	exon	75051173	75051285	+
GWHAAZE00000004	exon	75051503	75051620	+
GWHAAZE00000004	CDS	75049022	75049231	+
GWHAAZE00000004	CDS	75049447	75049623	+
GWHAAZE00000004	CDS	75049781	75049912	+
GWHAAZE00000004	CDS	75050072	75050170	+
GWHAAZE00000004	CDS	75050528	75050644	+
GWHAAZE00000004	CDS	75050936	75051031	+
GWHAAZE00000004	CDS	75051173	75051285	+
GWHAAZE00000004	CDS	75051503	75051620	+

Transcript Sequence
>GWHTAAZE016388 ATGGACCACCTCTGTTTTTCTCTACTTTCATTATGCAGGGATGAAGAATATGCAGATATTGATTGGAATAATCTTGGGTTCGGTCTTATGCCAGCCGACAATATGTACACTATGAAATGCATTAAAGATGATATATTCGAACAAGGCAAACTTAGTCAATATGGCAACATTGAATTGAGCCCTTGTGCTGGCGTCTTAAACTACGGCCAGGGGCTTTTTGAAGGTATAAAAGCTTATAGGCGAGAAGATGGGCGCCTTTCCCTATTTCGCCCACACGATAATGCAATGCGTATGCAAATGGGTGCAGAGAGAATGTGCATGCCCTCCCCCTCAATCGATCAATTCGTCAACGCTGTGAAACAAACCGCACTTTCTAATAGGCGTTGGGTTCCTCCTCCAGGAAAAGGGGCTTTATATGTTAGGCCTCTACTAATAGGAAGTGGACCTATATTGGGTTTAGCTCCAGCACCAGAATACACTTTCCTTATATATGCATCTCCTGTTGGAAACTATTTCAAGGAGGGTTCTGCCCCTTTGAAATTATACATCGAAGATGAATTTCATCGTGCCACTCGTGGTGGAGCTGGAGGTGTCAAAAGCATTACTAATTATGCCCCAGTTTTGAAACCCTTAACTAAAGCAAGGGACAGAGGATTCTCCGATGTGTTATACCTCGATTCAGTGAATAAGAGAAATCTCGAGGAGGCTAGTTCTTGTAACATTTTTGTCGTGAAGGGCAATACTATTTCGACTCCAGCAGCTATTGGAACTATTCTTGAAGGTATCACAAGAAAAAGTATCATGGAGATTGCGCGTGATCTTGGCTACCAGGTTGAGGAACGTGCTGTTCCGGTAGACGAATTAGTTGAAGCAGATGAAGTTTTCTGCACTGGAACTGCTGTTGGTGTTGCTCCTGTGGGGACTATTACGTACAAGGGCAAAAGGATCGAATATAAGATGAGCTCGAGGCTTGTGTGCCGGGAACTTTATTCGACACTTGTAGGGATTCAAAGAGGCGTTATTGAAGATAAGTTTGGTTGGGTTGTGGATATAGATGCATGA

Network for GWHGAAZE016368

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01063.20	Aminotran_4	71	308	1.10E-38

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00826	E2.6.1.42, ilvE	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		2-Oxocarboxylic acid metabolism	map01210
		Biosynthesis of amino acids	map01230
		Cysteine and methionine metabolism	map00270
		Valine, leucine and isoleucine degradation	map00280
		Valine, leucine and isoleucine biosynthesis	map00290
		Pantothenate and CoA biosynthesis	map00770
		Glucosinolate biosynthesis	map00966

Gene Ontology

GO term	Ontology	Name
GO:0009081	biological_process	branched-chain amino acid metabolic process
GO:0003824	molecular_function	catalytic activity
GO:0004084	molecular_function	branched-chain-amino-acid transaminase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	26.745
	SRR3591706	second leaf	5.919
	SRR3591707	mature leaf	14.171
	SRR3591708	Shoot apex	15.533
	SRR3591709	Stem	10.987
	SRR3591710	White floral bud	1509.593
	SRR3591711	White flower	1769.334
	SRR3591712	Green floral bud	80.974
	SRR3591713	Yellow flower	1461.338
SRP173429	SRR8316895	Juvenile bud stage	4.249
	SRR8316896	Juvenile bud stage	10.598
	SRR8316897	Juvenile bud stage	4.842
	SRR8316894	Third green stage	3.851
	SRR8316900	Third green stage	28.557
	SRR8316901	Third green stage	21.136
	SRR8316898	Complete white stage	3.260
	SRR8316899	Complete white stage	3.554
	SRR8316903	Complete white stage	4.899
	SRR8316902	Silver flowering stage	955.609
	SRR8316904	Silver flowering stage	1213.708
	SRR8316905	Silver flowering stage	722.576
	SRR8316906	Gold flowering stage	2739.625
	SRR8316907	Gold flowering stage	2337.690
	SRR8316908	Gold flowering stage	2312.747
SRP132670	SRR6706286	Control	21.229
	SRR6706287	Light intensity 50%	24.359
	SRR6706288	Light intensity 20%	19.334
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	15.636
	CNS0095593	Slightly white alabastrum(diploid) 2	14.261
	CNS0095594	Slightly white alabastrum(diploid) 3	15.348
	CNS0095595	Whole white alabastrum(diploid) 2	46.838
	CNS0095596	Whole white alabastrum(diploid) 3	49.210
	CNS0095597	Whole white alabastrum(diploid) 4	90.308
	CNS0095598	Silvery flower (diploied) 1	131.575
	CNS0095599	Silvery flower (diploied) 2	129.867
	CNS0095600	Silvery flower (diploied) 3	490.709
	CNS0095601	Golden flower (diploid) 1	195.895
	CNS0095602	Golden flower (diploid) 2	393.117
	CNS0095603	Golden flower (diploid) 3	392.234
	CNS0095604	Slightly white alabastrum(tetraploid) 1	23.167
	CNS0095605	Slightly white alabastrum(tetraploid) 2	24.901
	CNS0095606	Slightly white alabastrum(tetraploid) 3	9.934
	CNS0095607	Whole white alabastrum(tetraploid) 1	68.383
	CNS0095608	Whole white alabastrum(tetraploid) 2	120.356
	CNS0095609	Whole white alabastrum(tetraploid) 3	37.475
	CNS0095610	Silvery flower (diploied) 1	334.432
	CNS0095611	Silvery flower (diploied) 2	405.030
	CNS0095612	Silvery flower (diploied) 3	2900.523
	CNS0095613	Golden flower (tetraploid) 1	963.216
	CNS0095614	Golden flower (tetraploid) 2	424.435
	CNS0095615	Golden flower (tetraploid) 3	1741.296
CRA001975	CRR073297	Stem 1	10.154
	CRR073298	Stem 2	7.173
	CRR073299	Stem 3	5.196
	CRR073300	Leaf 1	19.890
	CRR073301	Leaf 2	13.431
	CRR073302	Leaf 3	6.449
	CRR073303	Juvenile bud 1	36.591
	CRR073304	Juvenile bud 2	32.563
	CRR073305	Juvenile bud 3	4.568
	CRR073306	Third green 1	1840.136
	CRR073307	Third green 2	1246.624
	CRR073308	Third green 3	1346.639
	CRR073309	Second white 1	1691.281
	CRR073310	Second white 2	2490.002
	CRR073311	Second white 3	2200.278
	CRR073312	Silver flowering 1	1604.281
	CRR073313	Silver flowering 2	1077.597
	CRR073314	Silver flowering 3	1252.983
	CRR073315	Gold flowering 1	30.303
	CRR073316	Gold flowering 2	8.826
	CRR073317	Gold flowering 3	12.483
	CRR073318	Tawny withering 1	16.651
	CRR073319	Tawny withering 2	19.545
	CRR073320	Tawny withering 3	15.639