Gene detail

Detail information of GWHGAAZE016500

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009801063.1	0	PREDICTED: mitogen-activated protein kinase kinase kinase YODA-like isoform X1 [Nicotiana sylvestris]
Swissprot	tr\|Q9CAD5\|YODA_ARATH	1E-99	Mitogen-activated protein kinase kinase kinase YODA
trEMBL	tr\|M1B903\|M1B903_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400039936}
TAIR10	AT5G66850.1	1E-125	mitogen-activated protein kinase kinase kinase 5

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	77717881	77723103	-
GWHAAZE00000004	mRNA	77717881	77723103	-
GWHAAZE00000004	exon	77717881	77718109	-
GWHAAZE00000004	exon	77718509	77718606	-
GWHAAZE00000004	exon	77718695	77718904	-
GWHAAZE00000004	exon	77719702	77719827	-
GWHAAZE00000004	exon	77719916	77719975	-
GWHAAZE00000004	exon	77720327	77720402	-
GWHAAZE00000004	exon	77720615	77720778	-
GWHAAZE00000004	exon	77720882	77720944	-
GWHAAZE00000004	exon	77721073	77721160	-
GWHAAZE00000004	exon	77721236	77721844	-
GWHAAZE00000004	exon	77722562	77723103	-
GWHAAZE00000004	CDS	77722562	77723103	-
GWHAAZE00000004	CDS	77721236	77721844	-
GWHAAZE00000004	CDS	77721073	77721160	-
GWHAAZE00000004	CDS	77720882	77720944	-
GWHAAZE00000004	CDS	77720615	77720778	-
GWHAAZE00000004	CDS	77720327	77720402	-
GWHAAZE00000004	CDS	77719916	77719975	-
GWHAAZE00000004	CDS	77719702	77719827	-
GWHAAZE00000004	CDS	77718695	77718904	-
GWHAAZE00000004	CDS	77718509	77718606	-
GWHAAZE00000004	CDS	77717881	77718109	-

Transcript Sequence
>GWHTAAZE016520 ATGGCTGATCGGCGTCATAGACAATTAGGTTCTTCAAAATTCTTTTCTTTATCGGAAAGGATCGATTCTTACAGTAGGAGGATTTACTCCACTTTCTCATCACCTAAATCAATGCCTACTTCTCACAAGAATGTTTTTTCATCTCCATCTTCAGCATGTTCTTCTCCTTCAGATTCTCCTCTCAATTCCGGCGGATCCCCCTGTTCGAGGAGGCGGCTCACTCGCCAGCGTAAGCTTCGACATGTTAGTGATGGCGAGCTCGGTCTAAGGCCGAGTACCGGTAATGATCGCTCGAGATCGTTGCCAGCTTCGCCAAATTCAGGTTCAAGGTCTCCGCATAAGCATAAGCGTGAACATCGGTCCATGTCTGCTGTGCCTCAACCTTTGCCACTGCCTGAAGAGCATTCAATTGTCAGACTTAATGATAATTTGCATTCAATTGCCAAACCTAGCGATAATTTGCCGTTGCCAAATCAAGTGACACGCATAGTGAATGGATTTGGAAAGGATCGTACAGGGATTGGGAATCTGAGCTCTGGCAGTTATTTGCCTCATCAAACTATCGCGAAGACCCCAGATATTTCTGCAAAGTCATCTAAGTCTCCAACCTATTGCCGTACTCAAGATCAGAAAGCTGAAAGTGTTCATCGCAACTTAAGATTGAATGTCCCTGTAAGAAGTGCTCCAGCGAGTGGTTTTTCAAGTCCTGCTCTTAGCCCACGAAGATATAGTACGGTGGATCTTTTTCAATCCTCTGCTATGGTACCTCAAGAATTTCAGACCTTATCTCCTTCAGAATTTGCAAAATTCGATAGGGTCGCAGGTTTTACTTCCTCAAGAATTACACCTAGCCGTGATCCTTCTCCACTTCATAGCCCAACATTACAAAGTCCCTGCCGAAATACGAGAAGTCCTATTGCATTGCCTTCGCACTATAAATCTCTCCCAGGAAGTCCTGTGGGATGGCCTGAAGGTAACAATGCTAATGTCCACCCATTACCTCTTCCACCGGGGGTTTCGAGGCCGTCACAATCACCTACTCTTCGGCATATTATGGATAAATCAGATGGATCTTCGAAGAAAGGGCAATGGCAAAAAGGAAAACTCATTGGACGTGGTACATATGGCAGCGTCTATGTTGCAATCAATCGTGAAACTGGAGCCTTGTGTGCAATGAAAGAAGTTGATATTATTCCTGACAATTCAAAGTCGGCTGAATGTATAAAGCAGTTGGAGCAGGAAATTAAAGTTCTCCAGAATCTAAAGCATCATAACATTGTACAGTACTATGGCAGTGAAACAGTTGACAATCGCTTTTGCATTTATTTGGAGTATATTCATCCTGGATCAATTAGTAATTATGTTCGTGAACACTTCAGAGCTGTGACAGAATCTGTAGTTCGTAATTTCACTCGTCATATTGTCTCAGGGTTGGCTTATTTGCACAGCACAAAAACCATCCACAGGGACATTAAAGGGGCAAATTTGCTTGTTGATGCATCAGGTGTTGTAAAGCTTGCTGACTTTGGGTTGGCAAAACATCTTACAACATATATAACTGATCTTTCTTTGAAGGGCAGTCCACATTGGATGGCTCCAGAGGTCTTGCAAGCTATGATGAGAAAAGATTCCAGTCCTGAACATGCCTTTGCTGTTGACATATGGAGCTTGGGTTGTACAGTCATTGAGATGCTGACTGGAAAACCTCCTTGGAGTGAATATAACGGGGTGCAAGCTATGTTCAGTGTTCTAAACAGATCCCCAGAAATACCAGAAACACTATCTTTGGAAGGAAAGGATTTCCTCCGATGTTGCTTTCAGAGAAATCCAGCAGCTCGCCCATCAGCTTTTAAGCTACTGGAGCATCCTTTCTTACGAAATTCCCATGATCAAAACGTTTCAGTTTGCACGCAAGAATTTTCTGGAATGAAAATGAATGAAACATCACATAGTCCAAGAGAGTGGAGCAAACCTAAGGATTCAATGCCAGTTTCACCAGGCATATGGATTAAGCATGGAAAACTGCCATGCAATAGTGAAACTTCCCCACAACTTCACCCAGAAACTTCAGAGAATGGAACAACAACCCGTCTCTCTCCTCGTTCTACACTCGAAATTCTTCATAGTGTATCCTCCCCGGAGTTCAAGTGTAGTTCTTATACCATTGGCCTTTCAAGCATTTCCAATGATTTCCACCTCGAAACTGGAAACAACAATCCTTCCGCATTCCTGAGGACACAAGAAAGGGAAATCCCACACCTCTAA

Network for GWHGAAZE016500

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	365	625	1.50E-66

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	STE_STE11

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	35.563
	SRR3591706	second leaf	3.840
	SRR3591707	mature leaf	6.038
	SRR3591708	Shoot apex	7.785
	SRR3591709	Stem	23.342
	SRR3591710	White floral bud	11.352
	SRR3591711	White flower	18.271
	SRR3591712	Green floral bud	7.396
	SRR3591713	Yellow flower	10.838
SRP173429	SRR8316895	Juvenile bud stage	42.712
	SRR8316896	Juvenile bud stage	35.598
	SRR8316897	Juvenile bud stage	53.083
	SRR8316894	Third green stage	5.857
	SRR8316900	Third green stage	11.752
	SRR8316901	Third green stage	17.372
	SRR8316898	Complete white stage	3.855
	SRR8316899	Complete white stage	25.603
	SRR8316903	Complete white stage	8.266
	SRR8316902	Silver flowering stage	9.234
	SRR8316904	Silver flowering stage	11.655
	SRR8316905	Silver flowering stage	5.149
	SRR8316906	Gold flowering stage	21.201
	SRR8316907	Gold flowering stage	15.909
	SRR8316908	Gold flowering stage	22.536
SRP132670	SRR6706286	Control	5.989
	SRR6706287	Light intensity 50%	8.253
	SRR6706288	Light intensity 20%	6.263
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	20.636
	CNS0095593	Slightly white alabastrum(diploid) 2	22.589
	CNS0095594	Slightly white alabastrum(diploid) 3	25.270
	CNS0095595	Whole white alabastrum(diploid) 2	23.400
	CNS0095596	Whole white alabastrum(diploid) 3	5.048
	CNS0095597	Whole white alabastrum(diploid) 4	14.041
	CNS0095598	Silvery flower (diploied) 1	36.470
	CNS0095599	Silvery flower (diploied) 2	50.398
	CNS0095600	Silvery flower (diploied) 3	35.228
	CNS0095601	Golden flower (diploid) 1	49.277
	CNS0095602	Golden flower (diploid) 2	61.172
	CNS0095603	Golden flower (diploid) 3	56.397
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.101
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.653
	CNS0095606	Slightly white alabastrum(tetraploid) 3	9.459
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.033
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.183
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.026
	CNS0095610	Silvery flower (diploied) 1	14.478
	CNS0095611	Silvery flower (diploied) 2	19.497
	CNS0095612	Silvery flower (diploied) 3	21.557
	CNS0095613	Golden flower (tetraploid) 1	8.620
	CNS0095614	Golden flower (tetraploid) 2	10.775
	CNS0095615	Golden flower (tetraploid) 3	21.217
CRA001975	CRR073297	Stem 1	15.835
	CRR073298	Stem 2	12.159
	CRR073299	Stem 3	11.084
	CRR073300	Leaf 1	14.577
	CRR073301	Leaf 2	15.303
	CRR073302	Leaf 3	10.467
	CRR073303	Juvenile bud 1	11.380
	CRR073304	Juvenile bud 2	6.933
	CRR073305	Juvenile bud 3	12.788
	CRR073306	Third green 1	7.221
	CRR073307	Third green 2	5.186
	CRR073308	Third green 3	6.505
	CRR073309	Second white 1	6.746
	CRR073310	Second white 2	10.749
	CRR073311	Second white 3	12.095
	CRR073312	Silver flowering 1	11.734
	CRR073313	Silver flowering 2	8.755
	CRR073314	Silver flowering 3	9.640
	CRR073315	Gold flowering 1	13.720
	CRR073316	Gold flowering 2	36.715
	CRR073317	Gold flowering 3	13.132
	CRR073318	Tawny withering 1	22.314
	CRR073319	Tawny withering 2	44.604
	CRR073320	Tawny withering 3	22.708