Detail information of GWHGAAZE016744


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010655918.10PREDICTED: lysine-specific demethylase JMJ25-like isoform X2 [Vitis vinifera]
Swissprottr|Q9SSE9|JMJ25_ARATH3E-135Lysine-specific demethylase JMJ25
trEMBLtr|F6HIR3|F6HIR3_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB52109.1}
TAIR10AT1G62310.12E-146transcription factor jumonji (jmjC) domain-containing protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene8186617381877283-
GWHAAZE00000004mRNA8186617381877283-
GWHAAZE00000004exon8187722681877283-
GWHAAZE00000004exon8187668881876751-
GWHAAZE00000004exon8187585881876587-
GWHAAZE00000004exon8187316281873491-
GWHAAZE00000004exon8187159381871904-
GWHAAZE00000004exon8186747781867539-
GWHAAZE00000004exon8186636581866437-
GWHAAZE00000004exon8186617381866267-
GWHAAZE00000004CDS8187722681877283-
GWHAAZE00000004CDS8187668881876751-
GWHAAZE00000004CDS8187585881876587-
GWHAAZE00000004CDS8187316281873491-
GWHAAZE00000004CDS8187159381871904-
GWHAAZE00000004CDS8186747781867539-
GWHAAZE00000004CDS8186636581866437-
GWHAAZE00000004CDS8186617381866267-
Transcript Sequence

Network for GWHGAAZE016744

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02373.23JmjC5245721.00E-08
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyJumonji

KEGG pathway

KO Enzyme pathway mapID
K15601KDM3 Thermogenesis map04714

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf7.796
SRR3591706second leaf0.584
SRR3591707mature leaf0.000
SRR3591708Shoot apex2.364
SRR3591709Stem4.619
SRR3591710White floral bud9.229
SRR3591711White flower3.350
SRR3591712Green floral bud6.860
SRR3591713Yellow flower0.167
SRP173429 SRR8316895Juvenile bud stage 1.120
SRR8316896Juvenile bud stage 2.069
SRR8316897Juvenile bud stage 0.446
SRR8316894Third green stage 0.925
SRR8316900Third green stage 2.723
SRR8316901Third green stage 5.825
SRR8316898Complete white stage 4.786
SRR8316899Complete white stage 6.362
SRR8316903Complete white stage 16.193
SRR8316902Silver flowering stage5.712
SRR8316904Silver flowering stage6.378
SRR8316905Silver flowering stage0.793
SRR8316906Gold flowering stage 0.411
SRR8316907Gold flowering stage 0.016
SRR8316908Gold flowering stage 0.868
SRP132670SRR6706286Control2.708
SRR6706287Light intensity 50%4.778
SRR6706288Light intensity 20%3.650
CNP0000432CNS0095592Slightly white alabastrum(diploid) 11.404
CNS0095593Slightly white alabastrum(diploid) 22.681
CNS0095594Slightly white alabastrum(diploid) 31.074
CNS0095595Whole white alabastrum(diploid) 21.393
CNS0095596Whole white alabastrum(diploid) 31.738
CNS0095597Whole white alabastrum(diploid) 42.047
CNS0095598Silvery flower (diploied) 10.322
CNS0095599Silvery flower (diploied) 20.252
CNS0095600Silvery flower (diploied) 32.139
CNS0095601Golden flower (diploid) 10.156
CNS0095602Golden flower (diploid) 20.229
CNS0095603Golden flower (diploid) 30.142
CNS0095604Slightly white alabastrum(tetraploid) 11.449
CNS0095605Slightly white alabastrum(tetraploid) 21.606
CNS0095606Slightly white alabastrum(tetraploid) 34.350
CNS0095607Whole white alabastrum(tetraploid) 11.003
CNS0095608Whole white alabastrum(tetraploid) 20.395
CNS0095609Whole white alabastrum(tetraploid) 31.356
CNS0095610Silvery flower (diploied) 10.701
CNS0095611Silvery flower (diploied) 20.205
CNS0095612Silvery flower (diploied) 30.139
CNS0095613Golden flower (tetraploid) 10.036
CNS0095614Golden flower (tetraploid) 20.037
CNS0095615Golden flower (tetraploid) 30.275
CRA001975CRR073297Stem 13.146
CRR073298Stem 22.912
CRR073299Stem 33.698
CRR073300Leaf 18.615
CRR073301Leaf 25.306
CRR073302Leaf 35.711
CRR073303Juvenile bud 16.751
CRR073304Juvenile bud 211.261
CRR073305Juvenile bud 310.865
CRR073306Third green 15.973
CRR073307Third green 211.109
CRR073308Third green 310.257
CRR073309Second white 10.388
CRR073310Second white 20.236
CRR073311Second white 30.240
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.105
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.000
CRR073316Gold flowering 20.394
CRR073317Gold flowering 30.026
CRR073318Tawny withering 11.944
CRR073319Tawny withering 20.371
CRR073320Tawny withering 31.739