Gene detail

Detail information of GWHGAAZE016792

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010652944.1	2.3488E-143	PREDICTED: alternative NAD(P)H-ubiquinone oxidoreductase C1, chloroplastic/mitochondrial [Vitis vinifera]
Swissprot	tr\|Q8GXR9\|DHNA_ARATH	2E-118	Alternative NAD(P)H-ubiquinone oxidoreductase C1, chloroplastic/mitochondrial (Precursor)
trEMBL	tr\|F6H4F2\|F6H4F2_VITVI	9E-144	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB47163.1}
TAIR10	AT5G08740.1	2E-98	NAD(P)H dehydrogenase C1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	83022477	83026849	+
GWHAAZE00000004	mRNA	83022477	83026849	+
GWHAAZE00000004	exon	83022477	83022662	+
GWHAAZE00000004	exon	83022789	83023001	+
GWHAAZE00000004	exon	83026162	83026572	+
GWHAAZE00000004	exon	83026688	83026849	+
GWHAAZE00000004	CDS	83022477	83022662	+
GWHAAZE00000004	CDS	83022789	83023001	+
GWHAAZE00000004	CDS	83026162	83026572	+
GWHAAZE00000004	CDS	83026688	83026849	+

Transcript Sequence
>GWHTAAZE016812 ATGTGTATAAATATATCGGGTGAATTTGGTTTTTTCTTATGTGAGTCCAAATTGCGGATGCTGATTTTTCATTTTTGGACCTGGGCAGCCAGGTTGGTACTTGCTTTGGGGGCTGAATCCAAGCTTGATGCTGTACCGGGAGCCGTGGAGTTTGCACTGCCGTTCTCCACGCTGGAGGATGCATGTAAGGTTGATGCAAAACTAAGAAAATTGGAGCGAAAGTACTTTGGCAAGGACACTCCAATTCACGTGGCTGTTGTTGGATGTGGTTACGCTGGAGTTGAGTTAGCTGCCACAGTATCGGAACGACTGCAAGATAAGGGAGTTGTACATGCAATTAACGTGGAAAACACAATTTTACCAAATGCTCCACCTGGCAATAGGGAAGCTGCCTTAAAAGTTCTCTCGTCTAGGAAGGTTGAACTTATACTGGGTTATTTCGTCCGCTGTATAAAAAAGGCTGGCGAGTCTGGAACTTCATATGAGGACCTGAAAAATCTGGAAGCAATTGGTGATATAGCAGTAGCTGCATATGATCCTGAAAAATTTATTCTGGAGCTTCAACCCACTGAAAAGGGCCAACAAAGTCAAATTTTGGAAGCAGATTTAGTTTTATGGACTGTTGGGTCTAAACCTCTTCTTCCTCAATTGGAACCCTGTGACAAGCCCCATGAGCTCCCTCGTAATGCTAGGGGTCAAGCAGAAACAGATGATACTCTCCGTGTCAAGGGCCACCCACGCATATTTGCTGTTGGTGACTCTTCCGCATTGAGAGACTCTAAAGGAAAATTGCTTCCAGCCACTGCACAGGTTGCGTTTCAGCAAGCAGATTTTGCTGGTTGGAATCTATGGGCTGCAATCAACAACCGACCTCTGTTGCCATTTAGGTTGGGATCTGAAATCCATTGTTTATTCTTCTGTATTGCTGATTTCACTTTGCCGTTGTATCTACTTGTGGTCTCTCCTAGATAA

Network for GWHGAAZE016792

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07992.15	Pyr_redox_2	30	276	3.00E-24

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K17872	NDC1, ndbB	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Ubiquinone and other terpenoid-quinone biosynthesis	map00130

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	13.780
	SRR3591706	second leaf	22.789
	SRR3591707	mature leaf	20.617
	SRR3591708	Shoot apex	18.451
	SRR3591709	Stem	8.995
	SRR3591710	White floral bud	9.751
	SRR3591711	White flower	8.470
	SRR3591712	Green floral bud	13.586
	SRR3591713	Yellow flower	10.135
SRP173429	SRR8316895	Juvenile bud stage	10.260
	SRR8316896	Juvenile bud stage	14.231
	SRR8316897	Juvenile bud stage	7.568
	SRR8316894	Third green stage	6.349
	SRR8316900	Third green stage	18.535
	SRR8316901	Third green stage	16.134
	SRR8316898	Complete white stage	7.448
	SRR8316899	Complete white stage	16.061
	SRR8316903	Complete white stage	12.107
	SRR8316902	Silver flowering stage	6.691
	SRR8316904	Silver flowering stage	10.178
	SRR8316905	Silver flowering stage	5.720
	SRR8316906	Gold flowering stage	14.315
	SRR8316907	Gold flowering stage	17.511
	SRR8316908	Gold flowering stage	16.896
SRP132670	SRR6706286	Control	11.860
	SRR6706287	Light intensity 50%	12.744
	SRR6706288	Light intensity 20%	14.144
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.472
	CNS0095593	Slightly white alabastrum(diploid) 2	6.996
	CNS0095594	Slightly white alabastrum(diploid) 3	5.372
	CNS0095595	Whole white alabastrum(diploid) 2	8.584
	CNS0095596	Whole white alabastrum(diploid) 3	9.185
	CNS0095597	Whole white alabastrum(diploid) 4	10.599
	CNS0095598	Silvery flower (diploied) 1	11.523
	CNS0095599	Silvery flower (diploied) 2	11.928
	CNS0095600	Silvery flower (diploied) 3	18.779
	CNS0095601	Golden flower (diploid) 1	12.830
	CNS0095602	Golden flower (diploid) 2	13.086
	CNS0095603	Golden flower (diploid) 3	14.920
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.710
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.088
	CNS0095606	Slightly white alabastrum(tetraploid) 3	11.577
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.634
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.049
	CNS0095609	Whole white alabastrum(tetraploid) 3	16.496
	CNS0095610	Silvery flower (diploied) 1	15.080
	CNS0095611	Silvery flower (diploied) 2	21.196
	CNS0095612	Silvery flower (diploied) 3	21.852
	CNS0095613	Golden flower (tetraploid) 1	7.755
	CNS0095614	Golden flower (tetraploid) 2	10.704
	CNS0095615	Golden flower (tetraploid) 3	16.126
CRA001975	CRR073297	Stem 1	25.175
	CRR073298	Stem 2	21.376
	CRR073299	Stem 3	25.115
	CRR073300	Leaf 1	22.487
	CRR073301	Leaf 2	18.601
	CRR073302	Leaf 3	20.630
	CRR073303	Juvenile bud 1	21.572
	CRR073304	Juvenile bud 2	20.956
	CRR073305	Juvenile bud 3	21.385
	CRR073306	Third green 1	14.532
	CRR073307	Third green 2	10.479
	CRR073308	Third green 3	13.257
	CRR073309	Second white 1	23.460
	CRR073310	Second white 2	17.384
	CRR073311	Second white 3	16.101
	CRR073312	Silver flowering 1	18.307
	CRR073313	Silver flowering 2	14.465
	CRR073314	Silver flowering 3	15.406
	CRR073315	Gold flowering 1	52.949
	CRR073316	Gold flowering 2	73.347
	CRR073317	Gold flowering 3	43.707
	CRR073318	Tawny withering 1	14.939
	CRR073319	Tawny withering 2	14.409
	CRR073320	Tawny withering 3	20.622