Detail information of GWHGAAZE016797


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002520589.12.11163E-63Protein C9orf41, putative [Ricinus communis]
trEMBLtr|B9S3M0|B9S3M0_RICCO8E-64Protein C9orf41, putative {ECO:0000313|EMBL:EEF41822.1}
TAIR10AT2G32170.11E-52S-adenosyl-L-methionine-dependent methyltransferases superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene8307538283077532-
GWHAAZE00000004mRNA8307538283077532-
GWHAAZE00000004exon8307538283075406-
GWHAAZE00000004exon8307603683076149-
GWHAAZE00000004exon8307626083076326-
GWHAAZE00000004exon8307673483076798-
GWHAAZE00000004exon8307744183077532-
GWHAAZE00000004CDS8307744183077532-
GWHAAZE00000004CDS8307673483076798-
GWHAAZE00000004CDS8307626083076326-
GWHAAZE00000004CDS8307603683076149-
GWHAAZE00000004CDS8307538283075406-
Transcript Sequence

Network for GWHGAAZE016797

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF07942.13N222741132.30E-43
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K19787CARNMT1 Metabolic pathways map01100
Histidine metabolismmap00340

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf20.528
SRR3591706second leaf10.711
SRR3591707mature leaf10.928
SRR3591708Shoot apex20.364
SRR3591709Stem15.953
SRR3591710White floral bud13.045
SRR3591711White flower11.100
SRR3591712Green floral bud11.615
SRR3591713Yellow flower7.913
SRP173429 SRR8316895Juvenile bud stage 14.995
SRR8316896Juvenile bud stage 14.812
SRR8316897Juvenile bud stage 8.536
SRR8316894Third green stage 5.121
SRR8316900Third green stage 16.475
SRR8316901Third green stage 11.614
SRR8316898Complete white stage 6.719
SRR8316899Complete white stage 21.296
SRR8316903Complete white stage 9.336
SRR8316902Silver flowering stage6.751
SRR8316904Silver flowering stage8.334
SRR8316905Silver flowering stage4.070
SRR8316906Gold flowering stage 12.866
SRR8316907Gold flowering stage 8.624
SRR8316908Gold flowering stage 10.329
SRP132670SRR6706286Control7.283
SRR6706287Light intensity 50%6.029
SRR6706288Light intensity 20%6.752
CNP0000432CNS0095592Slightly white alabastrum(diploid) 111.805
CNS0095593Slightly white alabastrum(diploid) 217.904
CNS0095594Slightly white alabastrum(diploid) 311.767
CNS0095595Whole white alabastrum(diploid) 213.028
CNS0095596Whole white alabastrum(diploid) 311.423
CNS0095597Whole white alabastrum(diploid) 48.292
CNS0095598Silvery flower (diploied) 114.962
CNS0095599Silvery flower (diploied) 29.861
CNS0095600Silvery flower (diploied) 313.028
CNS0095601Golden flower (diploid) 110.774
CNS0095602Golden flower (diploid) 213.496
CNS0095603Golden flower (diploid) 313.772
CNS0095604Slightly white alabastrum(tetraploid) 114.601
CNS0095605Slightly white alabastrum(tetraploid) 212.899
CNS0095606Slightly white alabastrum(tetraploid) 316.712
CNS0095607Whole white alabastrum(tetraploid) 19.995
CNS0095608Whole white alabastrum(tetraploid) 28.060
CNS0095609Whole white alabastrum(tetraploid) 313.052
CNS0095610Silvery flower (diploied) 116.094
CNS0095611Silvery flower (diploied) 211.942
CNS0095612Silvery flower (diploied) 317.661
CNS0095613Golden flower (tetraploid) 18.482
CNS0095614Golden flower (tetraploid) 28.818
CNS0095615Golden flower (tetraploid) 39.437
CRA001975CRR073297Stem 112.659
CRR073298Stem 212.137
CRR073299Stem 38.995
CRR073300Leaf 111.342
CRR073301Leaf 29.197
CRR073302Leaf 39.398
CRR073303Juvenile bud 19.617
CRR073304Juvenile bud 25.614
CRR073305Juvenile bud 39.607
CRR073306Third green 12.459
CRR073307Third green 25.106
CRR073308Third green 32.855
CRR073309Second white 14.458
CRR073310Second white 23.291
CRR073311Second white 33.346
CRR073312Silver flowering 13.034
CRR073313Silver flowering 21.335
CRR073314Silver flowering 32.253
CRR073315Gold flowering 15.497
CRR073316Gold flowering 217.940
CRR073317Gold flowering 34.877
CRR073318Tawny withering 110.275
CRR073319Tawny withering 211.440
CRR073320Tawny withering 310.380