Gene detail

Detail information of GWHGAAZE016899

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	EYU34882.1	3.0183E-133	hypothetical protein MIMGU_mgv1a019650mg [Erythranthe guttata]
trEMBL	tr\|A0A022R2K8\|A0A022R2K8_ERYGU	1E-133	Uncharacterized protein {ECO:0000313\|EMBL:EYU34882.1}
TAIR10	AT3G18770.1	1E-55	Autophagy-related protein 13

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	85396424	85401683	-
GWHAAZE00000004	mRNA	85396424	85401683	-
GWHAAZE00000004	exon	85400649	85401683	-
GWHAAZE00000004	exon	85399818	85399990	-
GWHAAZE00000004	exon	85396424	85396766	-
GWHAAZE00000004	CDS	85400649	85401683	-
GWHAAZE00000004	CDS	85399818	85399990	-
GWHAAZE00000004	CDS	85396424	85396766	-

Transcript Sequence
>GWHTAAZE016919 ATGGCATCATATAACTGCAATAGTCCCTCTGAGCCTGCAAAAATGGAGCAGATAATCCCCGAATTCTTCGCAAAGTGCCTCCACATAATACTCGAATCTAGGTGTCCGTATGCCTCTTCACGAAGCTATAGTGTTGATCAATCCATATCTTCCCCATGTTCTTCCTCATCCTCGTCATCAAGTATAAGGCTGAGGGACAAGTGTTTTAATCTAGCTCTACGTGATTGCCCTGCTGCGCTAGAGAATATAGAGTTTTATCGTCAGAGTAACCTTGAATCTGTTATTGTTGATGTGATTTTAGTGCAAAGACGAAATGAGTGGGACCCTAATGAATTTGGATTTGAGAATAAGAGCGAAATTATTATCGAGAGATGGGTTGTGCAATATGCGAGTAGGAATAGTGGTAGGAGGTCGAATTCCACCACTCTGTCTAAAAAATTGATCTTGCTTTTAAGGTCCTTATATGTAACTATTAGGCTTTTGCCTGCTTATAAGCTCTTTCGCGAGCTCAATTCTTCAGGACAAATTCGATCATTTCAACTCAGTCATCGAGTTTCTTCTTTTGTTGAGCCGTTTACTCGTAGAGAAGAGGCGGAGATGCAACCATTTGTGTTCACCCCAGTGGACACTTCCTTTGGCAGGCTTTCCATTTCGGTGTTTTATAAGTCTTCAGCCTCTGATGCAAATTCTGAGCTATCATCCCCTATAACCCCGCATTTGATACCCGATTACGTTGGTAGTCCAATGGCGGACCCGCTTAAGAGGTTCCCTTCTGTTCCCGTTCCCCAATACTCTCCTTCCTCCTCCTCTTCTCCATTTGGTAGGCGGCATAGTTGGAGTTATGACCAATATAGATCCTCACCCCCTTCATCGTTCCCCTCACCTTCGCCTTCAGAATCCCGTTTTTCAGTCTCTAAACCGAGCTCCCATGGTCTCCCTCCTATGAGTTTACCTCGTAATCTGCCCGCAATGCTTCAAGATCGTACCGGAAATACAGGTTTCGATGGTTATTGGCCTTCTTCCCCTATGTTTTCATTGTTCACCGACTCTGGAAGACTATCTGGGGCAAGGATATCATCCAACAGCTCAGCGCAGAAATCGTTCTCTAGGAACTCCAGTAGGTTGTCATACCAAGATGACTACGATGATTCTTCGTTTTGTGGGCCATTTGTTTTGGATGATGATGAGTTGATGGATCCACGTAGCAGACCTGGCTTGCATGACCAAACAGGACAGATGTGGGACCCACACGAGCCTGGAGGGCTTTTTCGGATCAGAAGAACACAAGATGCCACCGTTGGTGCACTTCACCATATGCTGATGAAAGCGCCACCTCTCCACCGACAGCACTTAACTGAATCAACAAACTTGTCGGTAAACCCTAATCAGATTTTTGAGCAACCTGGCTTTCAGTTAACTGCTGATTCTTTAACTGCTGGGTCATCTTTGATTCTCGTGTCCAAAACAACGGCCGATGCCCTTGAAGAGCTCCGCGGTTACAGAGAGATGAAAGACTTGTTGCTTAGGCAAGGGGGAAGGTCCGCTACATAG

Network for GWHGAAZE016899

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF10033.10	ATG13	19	224	2.90E-31

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K08331	ATG13	Autophagy - animal	map04140
		Autophagy - yeast	map04138
		Autophagy - other	map04136
		Longevity regulating pathway	map04211

Gene Ontology

GO term	Ontology	Name
GO:0006914	biological_process	autophagy
GO:1990316	cellular_component	Atg1/ULK1 kinase complex

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	12.012
	SRR3591706	second leaf	11.676
	SRR3591707	mature leaf	27.163
	SRR3591708	Shoot apex	14.381
	SRR3591709	Stem	33.334
	SRR3591710	White floral bud	17.031
	SRR3591711	White flower	19.681
	SRR3591712	Green floral bud	12.328
	SRR3591713	Yellow flower	18.402
SRP173429	SRR8316895	Juvenile bud stage	7.109
	SRR8316896	Juvenile bud stage	9.591
	SRR8316897	Juvenile bud stage	3.495
	SRR8316894	Third green stage	3.423
	SRR8316900	Third green stage	10.227
	SRR8316901	Third green stage	10.625
	SRR8316898	Complete white stage	5.402
	SRR8316899	Complete white stage	14.602
	SRR8316903	Complete white stage	12.336
	SRR8316902	Silver flowering stage	11.191
	SRR8316904	Silver flowering stage	16.359
	SRR8316905	Silver flowering stage	6.721
	SRR8316906	Gold flowering stage	19.350
	SRR8316907	Gold flowering stage	22.400
	SRR8316908	Gold flowering stage	20.267
SRP132670	SRR6706286	Control	13.415
	SRR6706287	Light intensity 50%	12.710
	SRR6706288	Light intensity 20%	13.079
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.353
	CNS0095593	Slightly white alabastrum(diploid) 2	6.281
	CNS0095594	Slightly white alabastrum(diploid) 3	6.817
	CNS0095595	Whole white alabastrum(diploid) 2	5.062
	CNS0095596	Whole white alabastrum(diploid) 3	5.047
	CNS0095597	Whole white alabastrum(diploid) 4	5.507
	CNS0095598	Silvery flower (diploied) 1	15.104
	CNS0095599	Silvery flower (diploied) 2	10.104
	CNS0095600	Silvery flower (diploied) 3	18.810
	CNS0095601	Golden flower (diploid) 1	9.623
	CNS0095602	Golden flower (diploid) 2	16.840
	CNS0095603	Golden flower (diploid) 3	15.662
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.621
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.100
	CNS0095606	Slightly white alabastrum(tetraploid) 3	10.306
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.151
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.640
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.185
	CNS0095610	Silvery flower (diploied) 1	19.114
	CNS0095611	Silvery flower (diploied) 2	19.428
	CNS0095612	Silvery flower (diploied) 3	21.334
	CNS0095613	Golden flower (tetraploid) 1	10.748
	CNS0095614	Golden flower (tetraploid) 2	12.686
	CNS0095615	Golden flower (tetraploid) 3	18.385
CRA001975	CRR073297	Stem 1	14.985
	CRR073298	Stem 2	13.573
	CRR073299	Stem 3	15.303
	CRR073300	Leaf 1	14.786
	CRR073301	Leaf 2	14.008
	CRR073302	Leaf 3	8.608
	CRR073303	Juvenile bud 1	11.774
	CRR073304	Juvenile bud 2	8.543
	CRR073305	Juvenile bud 3	14.200
	CRR073306	Third green 1	9.572
	CRR073307	Third green 2	10.674
	CRR073308	Third green 3	11.158
	CRR073309	Second white 1	11.658
	CRR073310	Second white 2	14.614
	CRR073311	Second white 3	11.527
	CRR073312	Silver flowering 1	8.599
	CRR073313	Silver flowering 2	7.802
	CRR073314	Silver flowering 3	5.779
	CRR073315	Gold flowering 1	17.973
	CRR073316	Gold flowering 2	29.806
	CRR073317	Gold flowering 3	20.417
	CRR073318	Tawny withering 1	12.379
	CRR073319	Tawny withering 2	12.971
	CRR073320	Tawny withering 3	11.342