Gene detail

Detail information of GWHGAAZE016938

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006362781.1	1.0252E-125	PREDICTED: shikimate kinase, chloroplastic-like isoform X1 [Solanum tuberosum]
Swissprot	tr\|Q00497\|SK_SOLLC	3E-125	Shikimate kinase, chloroplastic (Precursor)
trEMBL	tr\|M1BDG7\|M1BDG7_SOLTU	4E-126	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400042674}
TAIR10	AT2G21940.4	3E-80	shikimate kinase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	86587946	86594566	+
GWHAAZE00000004	mRNA	86587946	86594566	+
GWHAAZE00000004	exon	86587946	86588150	+
GWHAAZE00000004	exon	86588994	86589052	+
GWHAAZE00000004	exon	86589282	86589336	+
GWHAAZE00000004	exon	86589417	86589489	+
GWHAAZE00000004	exon	86589927	86590014	+
GWHAAZE00000004	exon	86593814	86593896	+
GWHAAZE00000004	exon	86593994	86594123	+
GWHAAZE00000004	exon	86594474	86594566	+
GWHAAZE00000004	CDS	86587946	86588150	+
GWHAAZE00000004	CDS	86588994	86589052	+
GWHAAZE00000004	CDS	86589282	86589336	+
GWHAAZE00000004	CDS	86589417	86589489	+
GWHAAZE00000004	CDS	86589927	86590014	+
GWHAAZE00000004	CDS	86593814	86593896	+
GWHAAZE00000004	CDS	86593994	86594123	+
GWHAAZE00000004	CDS	86594474	86594566	+

Transcript Sequence
>GWHTAAZE016958 ATGGAGGCTAGAATTTTCCCTAGCTTGCAGTTGTCAACATGGATTGATTCAGAAAAGATTGTGAGGAAACCTAGTGGTTTATTGCGGTTTCATCAGAGGTCCACGGAAAAAGAGAGGCTTCAAATGCTTGTCTCTTGTCATTTGCAATACAGAAGAGCTGCTAAGAGGCATAATCTGGTCTCATGTTCTTCTCAGAACCATCAAGCTTCAGCATTGGAGTTTGAAAGCTTGCCTGCTTCAATTGAAGAAGCTCTAGTTTTAAAGAGTAAGTCAGAAGAAATTGAACCATATTTAGATGACCGGTGTATATATCTTGTTGGAATGATGGGCTCAGGTAAAACAACTATTGGCAGGATTTTGGCAGAAGTACTTGGTTATTCATTTTTTGACAGTGACAAGTTGATAGAGCAGGATGTTGGGGGGACTGTTGTATCTGACATCTTTAAGCTACATGGTGAGAGCTTCTTCAGAAATACTGAGACTAAGGTATTGCAGAAGCTGTCTTTTATGCACCGGCTAGTTGTTTCCACTGGTGGGGGTGCAGTTGTTCGGCCTATCAATTGGAAATACATGCACAAGGGGATTAGTGTTTGGTTAGATGTACCTCTAGAAGCCTTGGCACATAGAATTACATCTGTAGGAACGAATTCTCGCCCACTTTTGCATCATGGAGAAGGCGACACTTACACAAAGACTTTCAAGCGCTTATCTACTCTTTGGGAAGAGAGAAGTGAAGCGTACACCAATGCCAATGCACGGGTTTCTCTAGATAGTATGATGCCGTGA

Network for GWHGAAZE016938

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01202.23	SKI	109	258	1.50E-44

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00891	aroK, aroL	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Biosynthesis of amino acids	map01230
		Phenylalanine, tyrosine and tryptophan biosynthesis	map00400

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	42.935
	SRR3591706	second leaf	35.824
	SRR3591707	mature leaf	31.450
	SRR3591708	Shoot apex	22.734
	SRR3591709	Stem	50.310
	SRR3591710	White floral bud	14.481
	SRR3591711	White flower	22.399
	SRR3591712	Green floral bud	19.377
	SRR3591713	Yellow flower	37.141
SRP173429	SRR8316895	Juvenile bud stage	12.107
	SRR8316896	Juvenile bud stage	11.008
	SRR8316897	Juvenile bud stage	9.694
	SRR8316894	Third green stage	4.807
	SRR8316900	Third green stage	15.437
	SRR8316901	Third green stage	14.996
	SRR8316898	Complete white stage	5.207
	SRR8316899	Complete white stage	8.925
	SRR8316903	Complete white stage	3.390
	SRR8316902	Silver flowering stage	9.857
	SRR8316904	Silver flowering stage	18.044
	SRR8316905	Silver flowering stage	9.025
	SRR8316906	Gold flowering stage	43.081
	SRR8316907	Gold flowering stage	41.258
	SRR8316908	Gold flowering stage	61.540
SRP132670	SRR6706286	Control	7.924
	SRR6706287	Light intensity 50%	8.096
	SRR6706288	Light intensity 20%	8.672
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.792
	CNS0095593	Slightly white alabastrum(diploid) 2	6.577
	CNS0095594	Slightly white alabastrum(diploid) 3	7.688
	CNS0095595	Whole white alabastrum(diploid) 2	7.891
	CNS0095596	Whole white alabastrum(diploid) 3	3.985
	CNS0095597	Whole white alabastrum(diploid) 4	6.479
	CNS0095598	Silvery flower (diploied) 1	11.413
	CNS0095599	Silvery flower (diploied) 2	7.387
	CNS0095600	Silvery flower (diploied) 3	9.634
	CNS0095601	Golden flower (diploid) 1	9.536
	CNS0095602	Golden flower (diploid) 2	10.108
	CNS0095603	Golden flower (diploid) 3	10.743
	CNS0095604	Slightly white alabastrum(tetraploid) 1	12.286
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.890
	CNS0095606	Slightly white alabastrum(tetraploid) 3	17.621
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.781
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.761
	CNS0095609	Whole white alabastrum(tetraploid) 3	17.233
	CNS0095610	Silvery flower (diploied) 1	17.319
	CNS0095611	Silvery flower (diploied) 2	14.824
	CNS0095612	Silvery flower (diploied) 3	31.487
	CNS0095613	Golden flower (tetraploid) 1	23.060
	CNS0095614	Golden flower (tetraploid) 2	27.231
	CNS0095615	Golden flower (tetraploid) 3	24.903
CRA001975	CRR073297	Stem 1	12.200
	CRR073298	Stem 2	9.581
	CRR073299	Stem 3	7.087
	CRR073300	Leaf 1	5.078
	CRR073301	Leaf 2	3.901
	CRR073302	Leaf 3	3.619
	CRR073303	Juvenile bud 1	5.367
	CRR073304	Juvenile bud 2	4.794
	CRR073305	Juvenile bud 3	5.628
	CRR073306	Third green 1	18.954
	CRR073307	Third green 2	11.895
	CRR073308	Third green 3	14.078
	CRR073309	Second white 1	23.131
	CRR073310	Second white 2	33.681
	CRR073311	Second white 3	32.338
	CRR073312	Silver flowering 1	35.861
	CRR073313	Silver flowering 2	23.698
	CRR073314	Silver flowering 3	22.293
	CRR073315	Gold flowering 1	5.761
	CRR073316	Gold flowering 2	6.873
	CRR073317	Gold flowering 3	3.319
	CRR073318	Tawny withering 1	7.241
	CRR073319	Tawny withering 2	7.047
	CRR073320	Tawny withering 3	5.777