Gene detail

Detail information of GWHGAAZE016975

Functional Annotation

Database	Orthologs	Annotation
Nr	AHB62409.1	L-myo-inositol-1-phosphate synthase [Actinidia eriantha]
Swissprot	tr\|Q9LW96\|INO1_TOBAC	Inositol-3-phosphate synthase
trEMBL	tr\|V5TCU6\|V5TCU6_ACTER	L-myo-inositol-1-phosphate synthase {ECO:0000313\|EMBL:AHB62409.1}
TAIR10	AT5G10170.1	myo-inositol-1-phosphate synthase 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	88173657	88179194	+
GWHAAZE00000004	mRNA	88173657	88179194	+
GWHAAZE00000004	exon	88173657	88173844	+
GWHAAZE00000004	exon	88173951	88174019	+
GWHAAZE00000004	exon	88175157	88175292	+
GWHAAZE00000004	exon	88176022	88176269	+
GWHAAZE00000004	exon	88176756	88176982	+
GWHAAZE00000004	exon	88177103	88177218	+
GWHAAZE00000004	exon	88177550	88177726	+
GWHAAZE00000004	exon	88178248	88178436	+
GWHAAZE00000004	exon	88178674	88178736	+
GWHAAZE00000004	exon	88179075	88179194	+
GWHAAZE00000004	CDS	88173657	88173844	+
GWHAAZE00000004	CDS	88173951	88174019	+
GWHAAZE00000004	CDS	88175157	88175292	+
GWHAAZE00000004	CDS	88176022	88176269	+
GWHAAZE00000004	CDS	88176756	88176982	+
GWHAAZE00000004	CDS	88177103	88177218	+
GWHAAZE00000004	CDS	88177550	88177726	+
GWHAAZE00000004	CDS	88178248	88178436	+
GWHAAZE00000004	CDS	88178674	88178736	+
GWHAAZE00000004	CDS	88179075	88179194	+

Transcript Sequence
>GWHTAAZE016995 ATGTTTATTGAGAGCTTTAAGGTAGAAAGCCCAAATGTTAAGTACACCGAGGGTGAGATACACTCTGTGTACAATTACGAGACCACTGAGCTTCTTCATGAGAACAAAAATGGTGCCTATCAGTGGACTGTTAAACCCAAATCTGTCAAATACGAGTTCAAGACTGATACCCATGTCCCCAAATTAGGGGTTATGCTTGTTGGGTGGGGAGGCAACAATGGTTCTACCCTTACTGCTGGTGTTATTGCTAATCGGGAGGGAATCTCTTGGGCAACAAAAGACAAGGTGCAACAAGCCAACTACTTTGGGTCACTCACCCAGGCCTCTACAATTCGAGTTGGGTCTTTCAATGGAGAGGAGATTTATGCTCCATTCAAGAGCTTGCTCCCCATGGTGAACCCAGATGACATAGTGTTTGGGGGATGGGACATAAGTAATATGAACTTGGCTGATGCCATGGCTAGGGCTAAGGTGTTGGACATTGACCTACAGAAGCAGCTTAGGCCCTACATGGAATCCATGGTCCCACTCCCTGGAATCTACGACCCTGATTTCATCGCGGCCAACCAAGAGGCACGTGCCAACAACTTAATCAAAGGAACCAAGAAAGAGCAAGTTCAACAAGTCATCAAAGACATTAGGGAATTTAAGGAGGCGAACAAGGTGGATAAAGTAGTGGTTCTGTGGACAGCAAACACAGAGAGATACAGCAATATAATTGTAGGACTAAATGACACTGAAGAAAACCTATTTGCCTCTTTGGAGAAGAATGAAACAGAGATATCACCTTCCACCTTGTTTGGCATAGCTTGTGTTCTGGAAAACGTTCCTTTCATCAATGGAAGCCCACAGAACACTTTTGTTCCAGGGCTGATTGATTTGGCCATAAGGAGGAACAGTTTGATTGGTGGAGATGACTTTAAGAGCGGTCAGACCAAGATGAAGTCAGTACTTGTTGATTTTCTCGTTGGAGCCGGTATCAAGCCCACATCAATTGTGAGCTACAACCATTTGGGAAACAACGACGGAATGAACCTCTCAGCTCCGCAAACCTTCCGTTCTAAGGAGATTTCCAAGAGCAATGTCGTGGATGACATGGTCTCGAGCAATGCCATCCTTTATGAGCCTGGCGAGCATCCTGACCATGTGGTTGTTATCAAGTACGTGCCGTATGTGGGAGATAGCAAAAGGGCTATGGACGAGTACACATCAGAGATATTCATGGGTGGTAAGAACACCATAGTTCTTCACAACACTTGCGAGGACTCACTCTTGGCCGCTCCCATCATCTTGGACCTTGTGCTCCTCGCCGAACTCAGCACTCGAATTCAGCTCAAAGCTGACGGAGAGGGTAAATTCCACTCATTCCACCCTGTGGCTACAATCCTGAGCTACCTCACCAAGGCTCCTCTTGTACCACCAGGCACGCCAGTGGTGAATGCGCTGGCGAAGCAGAGGGCGATGCTTGAGAACATACTGAGGGCTTGTGTTGGATTGGCTCCAGAGAACAACATGATTTTGGAATACAAATGA

Network for GWHGAAZE016975

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07994.13	NAD_binding_5	62	494	2.40E-140
PF01658.18	Inos-1-P_synth	310	423	6.20E-44

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01858	INO1, ISYNA1	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Inositol phosphate metabolism	map00562
		Streptomycin biosynthesis	map00521

Gene Ontology

GO term	Ontology	Name
GO:0006021	biological_process	inositol biosynthetic process
GO:0008654	biological_process	phospholipid biosynthetic process
GO:0004512	molecular_function	inositol-3-phosphate synthase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	58.248
	SRR3591706	second leaf	102.939
	SRR3591707	mature leaf	223.385
	SRR3591708	Shoot apex	120.166
	SRR3591709	Stem	80.667
	SRR3591710	White floral bud	84.777
	SRR3591711	White flower	62.999
	SRR3591712	Green floral bud	56.602
	SRR3591713	Yellow flower	14.808
SRP173429	SRR8316895	Juvenile bud stage	58.479
	SRR8316896	Juvenile bud stage	70.040
	SRR8316897	Juvenile bud stage	13.090
	SRR8316894	Third green stage	49.971
	SRR8316900	Third green stage	92.226
	SRR8316901	Third green stage	78.757
	SRR8316898	Complete white stage	43.403
	SRR8316899	Complete white stage	383.865
	SRR8316903	Complete white stage	92.458
	SRR8316902	Silver flowering stage	4.168
	SRR8316904	Silver flowering stage	8.835
	SRR8316905	Silver flowering stage	3.770
	SRR8316906	Gold flowering stage	6.393
	SRR8316907	Gold flowering stage	4.857
	SRR8316908	Gold flowering stage	2.228
SRP132670	SRR6706286	Control	139.204
	SRR6706287	Light intensity 50%	124.540
	SRR6706288	Light intensity 20%	110.716
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	33.277
	CNS0095593	Slightly white alabastrum(diploid) 2	44.227
	CNS0095594	Slightly white alabastrum(diploid) 3	30.102
	CNS0095595	Whole white alabastrum(diploid) 2	51.040
	CNS0095596	Whole white alabastrum(diploid) 3	24.038
	CNS0095597	Whole white alabastrum(diploid) 4	58.266
	CNS0095598	Silvery flower (diploied) 1	40.744
	CNS0095599	Silvery flower (diploied) 2	42.137
	CNS0095600	Silvery flower (diploied) 3	22.823
	CNS0095601	Golden flower (diploid) 1	93.495
	CNS0095602	Golden flower (diploid) 2	54.937
	CNS0095603	Golden flower (diploid) 3	54.082
	CNS0095604	Slightly white alabastrum(tetraploid) 1	42.609
	CNS0095605	Slightly white alabastrum(tetraploid) 2	27.491
	CNS0095606	Slightly white alabastrum(tetraploid) 3	112.314
	CNS0095607	Whole white alabastrum(tetraploid) 1	64.165
	CNS0095608	Whole white alabastrum(tetraploid) 2	38.355
	CNS0095609	Whole white alabastrum(tetraploid) 3	18.584
	CNS0095610	Silvery flower (diploied) 1	1.644
	CNS0095611	Silvery flower (diploied) 2	12.095
	CNS0095612	Silvery flower (diploied) 3	2.569
	CNS0095613	Golden flower (tetraploid) 1	0.510
	CNS0095614	Golden flower (tetraploid) 2	0.985
	CNS0095615	Golden flower (tetraploid) 3	0.359
CRA001975	CRR073297	Stem 1	93.349
	CRR073298	Stem 2	76.904
	CRR073299	Stem 3	101.040
	CRR073300	Leaf 1	144.125
	CRR073301	Leaf 2	128.270
	CRR073302	Leaf 3	85.536
	CRR073303	Juvenile bud 1	349.697
	CRR073304	Juvenile bud 2	223.303
	CRR073305	Juvenile bud 3	468.679
	CRR073306	Third green 1	18.229
	CRR073307	Third green 2	15.187
	CRR073308	Third green 3	31.473
	CRR073309	Second white 1	1.376
	CRR073310	Second white 2	2.950
	CRR073311	Second white 3	0.535
	CRR073312	Silver flowering 1	0.126
	CRR073313	Silver flowering 2	0.161
	CRR073314	Silver flowering 3	0.116
	CRR073315	Gold flowering 1	8.208
	CRR073316	Gold flowering 2	7.641
	CRR073317	Gold flowering 3	6.840
	CRR073318	Tawny withering 1	16.657
	CRR073319	Tawny withering 2	3.577
	CRR073320	Tawny withering 3	10.557