Detail information of GWHGAAZE016999


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP01451.10unnamed protein product [Coffea canephora]
Swissprottr|Q9LFU1|ASNS3_ARATH0Asparagine synthetase [glutamine-hydrolyzing] 3
trEMBLtr|A0A068TYV2|A0A068TYV2_COFCA0Asparagine synthetase {ECO:0000256|PIRNR:PIRNR001589}
TAIR10AT5G10240.10asparagine synthetase 3

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene8910654789120178-
GWHAAZE00000004mRNA8910654789120178-
GWHAAZE00000004exon8910654789106687-
GWHAAZE00000004exon8910741289107706-
GWHAAZE00000004exon8910818489108291-
GWHAAZE00000004exon8910839989108485-
GWHAAZE00000004exon8910867989108759-
GWHAAZE00000004exon8910970489109838-
GWHAAZE00000004exon8910999989110220-
GWHAAZE00000004exon8911031689110396-
GWHAAZE00000004exon8911145389111614-
GWHAAZE00000004exon8911199689112090-
GWHAAZE00000004exon8911781989117914-
GWHAAZE00000004exon8911871989118860-
GWHAAZE00000004exon8911911389119208-
GWHAAZE00000004exon8912002389120178-
GWHAAZE00000004CDS8912002389120178-
GWHAAZE00000004CDS8911911389119208-
GWHAAZE00000004CDS8911871989118860-
GWHAAZE00000004CDS8911781989117914-
GWHAAZE00000004CDS8911199689112090-
GWHAAZE00000004CDS8911145389111614-
GWHAAZE00000004CDS8911031689110396-
GWHAAZE00000004CDS8910999989110220-
GWHAAZE00000004CDS8910970489109838-
GWHAAZE00000004CDS8910867989108759-
GWHAAZE00000004CDS8910839989108485-
GWHAAZE00000004CDS8910818489108291-
GWHAAZE00000004CDS8910747389107706-
GWHAAZE00000004three_prime_UTR8910741289107472-
GWHAAZE00000004three_prime_UTR8910654789106687-
Transcript Sequence

Network for GWHGAAZE016999

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13537.7GATase_7271443.10E-43
PF00733.22Asn_synthase1893403.10E-59
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01953asnB, ASNS Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Biosynthesis of amino acidsmap01230
Alanine, aspartate and glutamate metabolismmap00250

Gene Ontology

GO term OntologyName
GO:0006529biological_processasparagine biosynthetic process
GO:0004066molecular_functionasparagine synthase (glutamine-hydrolyzing) activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf37.289
SRR3591706second leaf32.699
SRR3591707mature leaf23.193
SRR3591708Shoot apex47.810
SRR3591709Stem29.338
SRR3591710White floral bud68.276
SRR3591711White flower76.297
SRR3591712Green floral bud104.852
SRR3591713Yellow flower52.394
SRP173429 SRR8316895Juvenile bud stage 37.397
SRR8316896Juvenile bud stage 63.110
SRR8316897Juvenile bud stage 29.558
SRR8316894Third green stage 24.661
SRR8316900Third green stage 79.494
SRR8316901Third green stage 92.977
SRR8316898Complete white stage 25.404
SRR8316899Complete white stage 105.838
SRR8316903Complete white stage 40.991
SRR8316902Silver flowering stage24.066
SRR8316904Silver flowering stage31.557
SRR8316905Silver flowering stage18.202
SRR8316906Gold flowering stage 96.680
SRR8316907Gold flowering stage 59.641
SRR8316908Gold flowering stage 98.377
SRP132670SRR6706286Control50.661
SRR6706287Light intensity 50%58.108
SRR6706288Light intensity 20%71.142
CNP0000432CNS0095592Slightly white alabastrum(diploid) 147.716
CNS0095593Slightly white alabastrum(diploid) 248.038
CNS0095594Slightly white alabastrum(diploid) 349.327
CNS0095595Whole white alabastrum(diploid) 238.182
CNS0095596Whole white alabastrum(diploid) 341.723
CNS0095597Whole white alabastrum(diploid) 433.838
CNS0095598Silvery flower (diploied) 124.774
CNS0095599Silvery flower (diploied) 220.535
CNS0095600Silvery flower (diploied) 350.419
CNS0095601Golden flower (diploid) 121.857
CNS0095602Golden flower (diploid) 239.294
CNS0095603Golden flower (diploid) 336.884
CNS0095604Slightly white alabastrum(tetraploid) 157.211
CNS0095605Slightly white alabastrum(tetraploid) 242.533
CNS0095606Slightly white alabastrum(tetraploid) 388.717
CNS0095607Whole white alabastrum(tetraploid) 129.506
CNS0095608Whole white alabastrum(tetraploid) 221.475
CNS0095609Whole white alabastrum(tetraploid) 376.624
CNS0095610Silvery flower (diploied) 158.938
CNS0095611Silvery flower (diploied) 244.227
CNS0095612Silvery flower (diploied) 350.605
CNS0095613Golden flower (tetraploid) 138.080
CNS0095614Golden flower (tetraploid) 267.003
CNS0095615Golden flower (tetraploid) 351.758
CRA001975CRR073297Stem 152.109
CRR073298Stem 252.296
CRR073299Stem 350.651
CRR073300Leaf 199.454
CRR073301Leaf 273.884
CRR073302Leaf 382.509
CRR073303Juvenile bud 182.886
CRR073304Juvenile bud 273.916
CRR073305Juvenile bud 384.402
CRR073306Third green 121.301
CRR073307Third green 216.780
CRR073308Third green 323.095
CRR073309Second white 130.254
CRR073310Second white 238.073
CRR073311Second white 337.179
CRR073312Silver flowering 137.499
CRR073313Silver flowering 237.790
CRR073314Silver flowering 332.137
CRR073315Gold flowering 133.676
CRR073316Gold flowering 254.905
CRR073317Gold flowering 341.058
CRR073318Tawny withering 131.207
CRR073319Tawny withering 229.738
CRR073320Tawny withering 329.759