Gene detail

Detail information of GWHGAAZE017086

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	ABQ10199.1	0	cysteine protease Cp1 [Actinidia deliciosa]
Swissprot	tr\|Q40143\|CYSP3_SOLLC	0	Cysteine proteinase 3 (Precursor)
trEMBL	tr\|A5HIJ1\|A5HIJ1_ACTDE	0	Cysteine protease Cp1 {ECO:0000313\|EMBL:ABQ10199.1}
TAIR10	AT5G60360.1	1E-147	aleurain-like protease

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	91311517	91321427	-
GWHAAZE00000004	mRNA	91311517	91321427	-
GWHAAZE00000004	exon	91311517	91311554	-
GWHAAZE00000004	exon	91312559	91312694	-
GWHAAZE00000004	exon	91313428	91313559	-
GWHAAZE00000004	exon	91313657	91313921	-
GWHAAZE00000004	exon	91314804	91314877	-
GWHAAZE00000004	exon	91314993	91315108	-
GWHAAZE00000004	exon	91320821	91320942	-
GWHAAZE00000004	exon	91321228	91321427	-
GWHAAZE00000004	CDS	91321228	91321427	-
GWHAAZE00000004	CDS	91320821	91320942	-
GWHAAZE00000004	CDS	91314993	91315108	-
GWHAAZE00000004	CDS	91314804	91314877	-
GWHAAZE00000004	CDS	91313657	91313921	-
GWHAAZE00000004	CDS	91313428	91313559	-
GWHAAZE00000004	CDS	91312559	91312694	-
GWHAAZE00000004	CDS	91311517	91311554	-

Transcript Sequence
>GWHTAAZE017106 ATGGCTCACCTCACACCACTCACGCTCCTAATTCTCCTGATCGCCTTTGTTTCCGCCGGCGTACGCGCCGGCAACACTTTTTCCGACGCGAATCCAATCAAGCAAGTCGTATCTGACGGTCTACGTGAGTTGGAGAGTTCAGTTCTTAAAGTTCTCGGTAACACTCGCCATGCTCTCTCCTTCGCTCGATTCGCTCACAGGTATGGTAAGAGTTACGAGACAGTGGATGAGATGAAGATGAGGTTCTCGATCTTCAGTGAGAGCTTGAAGATAATTAGATCTCATAATAAGAAGGGCCTTTCTTATACTCTCGGTGTTAATGAGTTTGCGGATTGGACATGGGAAGAGTTCCGCGCAAATAGGCTGGGAGCTGCTCAAAACTGTTCTGCCACCACAGAGGGCAATCACAAGCTTACTGATGTTGTACTTCCTGAATTGAAAGACTGGAGGAAAGTTGGCATAGTTAGTCCAGTGAAGAACCAAGGTCAGTGTGGATCTTGCTGGACATTCAGCACAACTGGAGCACTAGAGTCAGCATATGCTCAAGCATATGGGAAGGGGATATCTCTATCGGAGCAGCAGCTTGTGGACTGTGCTGGAGCGTTTAACAACTTTGGGTGCAATGGTGGTTTGCCTTCACAAGCCTTTGAGTACATCAAATACAATGGTGGACTTGAAACTGAGGATTCATATCCTTACACTGGCGTAGATGGCAAATGCAAATTCTCTTCCCAGAATATTGCAGTCCAAGTCCTTGAATCTGTTAACATTACCCTGGGTGCTGAGGATGAGCTAAAGCAAGCAGTAGGGCTGATTAGGCCAGTAAGTGTGGCATTTGAGGTGGTAGATGGCTTCAAATTATACAAGGATGGAGTTTTCTCCAGCGACATTTGTGGAAGTTCTCCCATGGACGTGAACCATGCTGTTCTTGCGGTTGGGTATGGAGTAGAAAATGGGGTTCCATATTGGCTTATTAAGAACTCGTGGGGAGCAGACTGGGGCTTGGATGGCTACTTCAAAATGGAGATGGGGAAGAATATGTGCGGTGTGGCAACTTGTGCGTCATACCCTGTTGTTGCTTAA

Network for GWHGAAZE017086

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08246.13	Inhibitor_I29	61	117	1.40E-14
PF00112.24	Peptidase_C1	143	358	1.00E-75

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01366	CTSH	Lysosome	map04142
K01366	CTSH	Apoptosis	map04210

Gene Ontology

GO term	Ontology	Name
GO:0006508	biological_process	proteolysis
GO:0008234	molecular_function	cysteine-type peptidase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	281.470
	SRR3591706	second leaf	238.130
	SRR3591707	mature leaf	1655.353
	SRR3591708	Shoot apex	92.468
	SRR3591709	Stem	506.356
	SRR3591710	White floral bud	531.159
	SRR3591711	White flower	530.829
	SRR3591712	Green floral bud	474.743
	SRR3591713	Yellow flower	796.309
SRP173429	SRR8316895	Juvenile bud stage	114.786
	SRR8316896	Juvenile bud stage	193.107
	SRR8316897	Juvenile bud stage	69.932
	SRR8316894	Third green stage	89.377
	SRR8316900	Third green stage	359.988
	SRR8316901	Third green stage	301.988
	SRR8316898	Complete white stage	362.913
	SRR8316899	Complete white stage	580.587
	SRR8316903	Complete white stage	473.823
	SRR8316902	Silver flowering stage	369.774
	SRR8316904	Silver flowering stage	490.686
	SRR8316905	Silver flowering stage	311.506
	SRR8316906	Gold flowering stage	1141.686
	SRR8316907	Gold flowering stage	1207.358
	SRR8316908	Gold flowering stage	783.543
SRP132670	SRR6706286	Control	672.042
	SRR6706287	Light intensity 50%	660.819
	SRR6706288	Light intensity 20%	776.535
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	246.313
	CNS0095593	Slightly white alabastrum(diploid) 2	276.867
	CNS0095594	Slightly white alabastrum(diploid) 3	312.328
	CNS0095595	Whole white alabastrum(diploid) 2	286.899
	CNS0095596	Whole white alabastrum(diploid) 3	271.153
	CNS0095597	Whole white alabastrum(diploid) 4	341.540
	CNS0095598	Silvery flower (diploied) 1	459.588
	CNS0095599	Silvery flower (diploied) 2	524.838
	CNS0095600	Silvery flower (diploied) 3	1218.387
	CNS0095601	Golden flower (diploid) 1	744.768
	CNS0095602	Golden flower (diploid) 2	1583.201
	CNS0095603	Golden flower (diploid) 3	1554.483
	CNS0095604	Slightly white alabastrum(tetraploid) 1	247.381
	CNS0095605	Slightly white alabastrum(tetraploid) 2	227.895
	CNS0095606	Slightly white alabastrum(tetraploid) 3	309.104
	CNS0095607	Whole white alabastrum(tetraploid) 1	249.982
	CNS0095608	Whole white alabastrum(tetraploid) 2	273.685
	CNS0095609	Whole white alabastrum(tetraploid) 3	474.075
	CNS0095610	Silvery flower (diploied) 1	1035.939
	CNS0095611	Silvery flower (diploied) 2	1264.740
	CNS0095612	Silvery flower (diploied) 3	1164.378
	CNS0095613	Golden flower (tetraploid) 1	1011.197
	CNS0095614	Golden flower (tetraploid) 2	1291.294
	CNS0095615	Golden flower (tetraploid) 3	632.748
CRA001975	CRR073297	Stem 1	195.772
	CRR073298	Stem 2	223.657
	CRR073299	Stem 3	286.496
	CRR073300	Leaf 1	322.788
	CRR073301	Leaf 2	296.201
	CRR073302	Leaf 3	383.022
	CRR073303	Juvenile bud 1	546.941
	CRR073304	Juvenile bud 2	617.900
	CRR073305	Juvenile bud 3	600.252
	CRR073306	Third green 1	727.662
	CRR073307	Third green 2	789.032
	CRR073308	Third green 3	622.223
	CRR073309	Second white 1	1781.905
	CRR073310	Second white 2	1260.907
	CRR073311	Second white 3	1322.089
	CRR073312	Silver flowering 1	1761.935
	CRR073313	Silver flowering 2	1756.854
	CRR073314	Silver flowering 3	1517.241
	CRR073315	Gold flowering 1	1186.540
	CRR073316	Gold flowering 2	1224.146
	CRR073317	Gold flowering 3	1322.845
	CRR073318	Tawny withering 1	494.202
	CRR073319	Tawny withering 2	378.985
	CRR073320	Tawny withering 3	295.128