Gene detail

Detail information of GWHGAAZE017221

Functional Annotation

Database	Orthologs	Annotation
Nr	CBI35784.3	unnamed protein product [Vitis vinifera]
Swissprot	tr\|Q9C8M9\|SRF6_ARATH	Protein STRUBBELIG-RECEPTOR FAMILY 6 (Precursor)
trEMBL	tr\|D7TZI8\|D7TZI8_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI35784.3}
TAIR10	AT1G53730.1	STRUBBELIG-receptor family 6

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	2750473	2757058	+
GWHAAZE00000005	mRNA	2750473	2757058	+
GWHAAZE00000005	exon	2750473	2750603	+
GWHAAZE00000005	exon	2750741	2750812	+
GWHAAZE00000005	exon	2750904	2750969	+
GWHAAZE00000005	exon	2751056	2751127	+
GWHAAZE00000005	exon	2751223	2751294	+
GWHAAZE00000005	exon	2751669	2751740	+
GWHAAZE00000005	exon	2751826	2751891	+
GWHAAZE00000005	exon	2752247	2752309	+
GWHAAZE00000005	exon	2752410	2752729	+
GWHAAZE00000005	exon	2753770	2754053	+
GWHAAZE00000005	exon	2754610	2754881	+
GWHAAZE00000005	exon	2755065	2755197	+
GWHAAZE00000005	exon	2756035	2756171	+
GWHAAZE00000005	exon	2756296	2756452	+
GWHAAZE00000005	exon	2756562	2757058	+
GWHAAZE00000005	CDS	2750473	2750603	+
GWHAAZE00000005	CDS	2750741	2750812	+
GWHAAZE00000005	CDS	2750904	2750969	+
GWHAAZE00000005	CDS	2751056	2751127	+
GWHAAZE00000005	CDS	2751223	2751294	+
GWHAAZE00000005	CDS	2751669	2751740	+
GWHAAZE00000005	CDS	2751826	2751891	+
GWHAAZE00000005	CDS	2752247	2752309	+
GWHAAZE00000005	CDS	2752410	2752729	+
GWHAAZE00000005	CDS	2753770	2754053	+
GWHAAZE00000005	CDS	2754610	2754881	+
GWHAAZE00000005	CDS	2755065	2755197	+
GWHAAZE00000005	CDS	2756035	2756171	+
GWHAAZE00000005	CDS	2756296	2756452	+
GWHAAZE00000005	CDS	2756562	2756723	+
GWHAAZE00000005	three_prime_UTR	2756724	2757058	+

Transcript Sequence
>GWHTAAZE017241 TCTGCTCTAAGGGTCATGTTTAGCAGTTTAAATTCACCTGGGCAGTTGTCCAAATGGAGCTCAAGTAGTGGTGATCCCTGTGGAGAGTCCTGGACAGGCATTACTTGCTCAGGCTCCAGAGTTACAGAAATAAAATTATCAGGTCTTGGACTTTCTGGTTCACTGGGATATCAGCTTGCGAGTATGACATCTGTAACCAACTTTGACATAAGCAATAATAATCTTGGAAACCAGATACCCTATCAGCTTCCACCGAACCTGCAGAGTTTAAATATAGCTGGATGTGGCTTCAGTGGTGGCATCCCCTATTCCGTATCGCAGATGACTTCTCTTAGATACTTAAATGTCGGTCATAATCAAATTCAGGGCCAACTGAATGACATGTTTGGACCTCTTTCATCTCTCTCCACAATGGATCTCTCTTTTAATGCGATAACTGGCAATCTTCCTGAAAGTTTCAGCTCACTTTCGAGAATGACCGATTTGTACTTGCAAAACAACCAGTTTACAGGCACTATTGACGTCCTTGCAAATCTTCCCCTCAAAACCCTGAATGTTGAGAATAACCGTTTTACTGGTTGGATTCCTGAGCCATTGAAAAACATAAATCTGCAGAGGAGTGGTAACTCATGGAGCTCAGGCCCTGCACCCCCACCTCCACCTGGCACACCTGCAGCCAACAGGCCCAATAGAAATAACAATTCTAATGGCAATAACAGCCCATCTAATAGCGGTGGCAATGGAGATCGCAGAGGTAAATCAGGTATAGGAGGCGGTGGTGTAGCAGGAATTGTGATATCCATTTTAGTTGTCGGAGCAATAGTAGCATTTTTTATCATGAAGAAGAGAAGACCCAGAAGGCCAGCTTCCGCTGATATAGAAAAACTCGATAATCAGCCTTTCACTTCTCTTGCATCAAAACAGGAAGTGCAAGAAATGAAGTCTATCCAAACTTCCTCCACAACAAACACGAAAACCTTTGAAACTTCGGCCTCAATAAATCTTAGACCACCACCTATTGATTGTAACAAATCGTTCGACGAAGATGATTTCTCAGGAAAACCCATAGTTACCAAGAAAGTAAATACAACTCCGATAAATGCTGCATTATATTCAGTTGCAGACTTGCAAATGGCTACAGATAGCTTTAGTGCTGAGAACCTTATTGGCGAGGGGTCTCTTGGACGTGTTTATCGGGCTCAATTTGATGATGGGAAGGTTCTTGCTGTCAAGAAAATTAATTCATCTGCCCTTCCTGGTCGACTATCCGAGGATTTTATGGATATAGTTTCAGATATATCGAGGTTACGGCATCCAAATGTGACAGAGCTGGTGGGCTATTGTTCAGAACATGGACAACACTTGGTACTTTATGAGTTCCTGAAAAATGGTTCTCTGTATGACTTCTTGCATCTCTCGGATGAATTCAGCAAGCCCTTGACGTGGAACAACCGTGTCAAAATTGCTTTGGGGGCGGCACGGGCATTGGAATATCTACATGAAGTTTGTTCACCATCTGTTGTTCATAAAAATTTCAAATCAGCAAACATTTTATTAGACACGGAGCTCAATCCTCGCCTTTCAGATTGTGGATTAGCAAGCCTTGTCCCTGATGCAGATCAGGCACTGAACCTCAATGCTGGGTCTGGATACAGCGCACCTGAGGTTGCAATGTCTGGCCAATATACTATTAAGAGTGATGTCTACAGTTTTGGAGTGGTCATGTTGGAACTTCTCAGCGGAAGACAACCTTTTGACAGTTCAAGGCCAAGATCGGAACAATCATTGGTTCGATGGGCAACACCCCAGCTCCATGACATTGATGCTCTGGCTAAAATGGTTGATCCAGCACTTAAAGGACTATATCCTGTTAAATCTCTATCCCGTTTTGCCGATGTAATTGCTTTATGCGTTCAGCCGGAGCCCGAGTTTCGACCCCCAATGTCAGAAGTGGTTCAAGCATTGGTTCGATTAGTGCAGCGTGCAAATATGAGCAAAAGAACTGTTGGGAATAATGAACAAGGTGGTGGTGGTGGTGGTGGTGCGTCCTTGCGGACTGGCAATGAATACGAACTCTAAATAGGAACAAATTACTTTCCGTTTTATGTCCAGAAAGAGAGATTTATGAATTTGTGATATTGTTCATTCAAGTTTCTACAGGAGAGATACCTGTTGCTGTATGTTTCAGTTTAGATCTCCTTGGAACGTTCCACTGTATTATATCGTGAGTTGGAAGTTTGGTAAAATTTGTCCATAACTAATGATCCTGTCTAGTTCCTTCATTGTCCCCTTTGATTTTGTTGGTGCATGAAGTTGATGTAATAATATTTGTTTTTAATTGGATGCTGTAATCAAATTGGGGTCGTATGAACACTGCTGAAATGCAATGAAATGCTCATATTTTGTTGCTCAAA

Network for GWHGAAZE017221

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	2	37	2.30E-08
PF13855.7	LRR_8	110	169	6.50E-09
PF07714.18	PK_Tyr_Ser-Thr	386	655	3.20E-40

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-V

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	99.930
	SRR3591706	second leaf	41.628
	SRR3591707	mature leaf	11.947
	SRR3591708	Shoot apex	76.832
	SRR3591709	Stem	70.271
	SRR3591710	White floral bud	32.121
	SRR3591711	White flower	27.349
	SRR3591712	Green floral bud	28.798
	SRR3591713	Yellow flower	12.364
SRP173429	SRR8316895	Juvenile bud stage	36.743
	SRR8316896	Juvenile bud stage	47.987
	SRR8316897	Juvenile bud stage	25.574
	SRR8316894	Third green stage	17.588
	SRR8316900	Third green stage	37.657
	SRR8316901	Third green stage	36.217
	SRR8316898	Complete white stage	17.849
	SRR8316899	Complete white stage	48.989
	SRR8316903	Complete white stage	26.423
	SRR8316902	Silver flowering stage	16.533
	SRR8316904	Silver flowering stage	25.007
	SRR8316905	Silver flowering stage	9.918
	SRR8316906	Gold flowering stage	30.204
	SRR8316907	Gold flowering stage	29.414
	SRR8316908	Gold flowering stage	37.709
SRP132670	SRR6706286	Control	25.430
	SRR6706287	Light intensity 50%	29.363
	SRR6706288	Light intensity 20%	29.812
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	42.787
	CNS0095593	Slightly white alabastrum(diploid) 2	43.391
	CNS0095594	Slightly white alabastrum(diploid) 3	34.999
	CNS0095595	Whole white alabastrum(diploid) 2	32.147
	CNS0095596	Whole white alabastrum(diploid) 3	22.531
	CNS0095597	Whole white alabastrum(diploid) 4	27.036
	CNS0095598	Silvery flower (diploied) 1	39.488
	CNS0095599	Silvery flower (diploied) 2	38.210
	CNS0095600	Silvery flower (diploied) 3	42.694
	CNS0095601	Golden flower (diploid) 1	41.232
	CNS0095602	Golden flower (diploid) 2	45.964
	CNS0095603	Golden flower (diploid) 3	44.989
	CNS0095604	Slightly white alabastrum(tetraploid) 1	46.613
	CNS0095605	Slightly white alabastrum(tetraploid) 2	35.016
	CNS0095606	Slightly white alabastrum(tetraploid) 3	85.639
	CNS0095607	Whole white alabastrum(tetraploid) 1	28.390
	CNS0095608	Whole white alabastrum(tetraploid) 2	15.356
	CNS0095609	Whole white alabastrum(tetraploid) 3	40.514
	CNS0095610	Silvery flower (diploied) 1	33.981
	CNS0095611	Silvery flower (diploied) 2	29.250
	CNS0095612	Silvery flower (diploied) 3	22.984
	CNS0095613	Golden flower (tetraploid) 1	10.488
	CNS0095614	Golden flower (tetraploid) 2	22.031
	CNS0095615	Golden flower (tetraploid) 3	8.343
CRA001975	CRR073297	Stem 1	50.962
	CRR073298	Stem 2	47.288
	CRR073299	Stem 3	45.962
	CRR073300	Leaf 1	49.619
	CRR073301	Leaf 2	46.438
	CRR073302	Leaf 3	41.364
	CRR073303	Juvenile bud 1	39.014
	CRR073304	Juvenile bud 2	27.390
	CRR073305	Juvenile bud 3	52.614
	CRR073306	Third green 1	37.933
	CRR073307	Third green 2	30.693
	CRR073308	Third green 3	34.887
	CRR073309	Second white 1	43.884
	CRR073310	Second white 2	31.201
	CRR073311	Second white 3	33.902
	CRR073312	Silver flowering 1	42.187
	CRR073313	Silver flowering 2	51.921
	CRR073314	Silver flowering 3	41.116
	CRR073315	Gold flowering 1	19.591
	CRR073316	Gold flowering 2	30.319
	CRR073317	Gold flowering 3	21.087
	CRR073318	Tawny withering 1	79.052
	CRR073319	Tawny withering 2	55.605
	CRR073320	Tawny withering 3	79.052