Detail information of GWHGAAZE017280


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006465927.17.75633E-71PREDICTED: transcription initiation factor TFIID subunit 12b-like [Citrus sinensis]
Swissprottr|B2C6R6|TAFCL_ARATH1E-66Transcription initiation factor TFIID subunit 12b
trEMBLtr|A0A067FCH7|A0A067FCH7_CITSI6E-71Uncharacterized protein {ECO:0000313|EMBL:KDO65043.1}
TAIR10AT1G17440.25E-46Transcription initiation factor TFIID subunit A

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene37729803777974-
GWHAAZE00000005mRNA37729803777974-
GWHAAZE00000005exon37777673777974-
GWHAAZE00000005exon37770883777230-
GWHAAZE00000005exon37766993776773-
GWHAAZE00000005exon37747943774872-
GWHAAZE00000005exon37741003774164-
GWHAAZE00000005exon37732993773334-
GWHAAZE00000005exon37729803773213-
GWHAAZE00000005CDS37777673777974-
GWHAAZE00000005CDS37770883777230-
GWHAAZE00000005CDS37766993776773-
GWHAAZE00000005CDS37747943774872-
GWHAAZE00000005CDS37741003774164-
GWHAAZE00000005CDS37732993773334-
GWHAAZE00000005CDS37731213773213-
GWHAAZE00000005three_prime_UTR37729803773120-
Transcript Sequence

Network for GWHGAAZE017280

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0245map03022 Basal transcription factors
GO:0005685 U1 snRNP GOslim:cellular_component
GO:0005669 transcription factor TFIID complex GOslim:cellular_component
GO:0006376 mRNA splice site selection GOslim:biological_process
GO:0006352 DNA-templated transcription, initiation GOslim:biological_process
GO:0003676 nucleic acid binding GOslim:molecular_function
GO:0003729 mRNA binding GOslim:molecular_function
map03040 Spliceosome
map04657 IL-17 signaling pathway


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03847.14TFIID_20kDa1081748.20E-28
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03126TAF12 Basal transcription factors map03022

Gene Ontology

GO term OntologyName
GO:0006352biological_processDNA-templated transcription, initiation
GO:0005669cellular_componenttranscription factor TFIID complex
GO:0046982molecular_functionprotein heterodimerization activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf7.555
SRR3591706second leaf4.106
SRR3591707mature leaf2.449
SRR3591708Shoot apex6.648
SRR3591709Stem4.540
SRR3591710White floral bud5.970
SRR3591711White flower5.037
SRR3591712Green floral bud5.117
SRR3591713Yellow flower3.890
SRP173429 SRR8316895Juvenile bud stage 6.515
SRR8316896Juvenile bud stage 9.385
SRR8316897Juvenile bud stage 5.831
SRR8316894Third green stage 2.999
SRR8316900Third green stage 6.641
SRR8316901Third green stage 6.947
SRR8316898Complete white stage 0.761
SRR8316899Complete white stage 7.540
SRR8316903Complete white stage 5.497
SRR8316902Silver flowering stage2.889
SRR8316904Silver flowering stage3.521
SRR8316905Silver flowering stage1.343
SRR8316906Gold flowering stage 3.725
SRR8316907Gold flowering stage 4.413
SRR8316908Gold flowering stage 4.677
SRP132670SRR6706286Control11.059
SRR6706287Light intensity 50%11.731
SRR6706288Light intensity 20%11.782
CNP0000432CNS0095592Slightly white alabastrum(diploid) 15.338
CNS0095593Slightly white alabastrum(diploid) 22.889
CNS0095594Slightly white alabastrum(diploid) 34.260
CNS0095595Whole white alabastrum(diploid) 24.131
CNS0095596Whole white alabastrum(diploid) 32.389
CNS0095597Whole white alabastrum(diploid) 43.646
CNS0095598Silvery flower (diploied) 15.474
CNS0095599Silvery flower (diploied) 23.332
CNS0095600Silvery flower (diploied) 33.819
CNS0095601Golden flower (diploid) 14.682
CNS0095602Golden flower (diploid) 24.559
CNS0095603Golden flower (diploid) 34.275
CNS0095604Slightly white alabastrum(tetraploid) 16.287
CNS0095605Slightly white alabastrum(tetraploid) 23.947
CNS0095606Slightly white alabastrum(tetraploid) 312.578
CNS0095607Whole white alabastrum(tetraploid) 12.753
CNS0095608Whole white alabastrum(tetraploid) 21.402
CNS0095609Whole white alabastrum(tetraploid) 36.399
CNS0095610Silvery flower (diploied) 16.451
CNS0095611Silvery flower (diploied) 27.357
CNS0095612Silvery flower (diploied) 32.190
CNS0095613Golden flower (tetraploid) 11.797
CNS0095614Golden flower (tetraploid) 24.406
CNS0095615Golden flower (tetraploid) 31.660
CRA001975CRR073297Stem 115.539
CRR073298Stem 212.824
CRR073299Stem 32.952
CRR073300Leaf 113.321
CRR073301Leaf 215.111
CRR073302Leaf 33.921
CRR073303Juvenile bud 12.925
CRR073304Juvenile bud 20.871
CRR073305Juvenile bud 34.141
CRR073306Third green 10.229
CRR073307Third green 20.031
CRR073308Third green 30.341
CRR073309Second white 10.000
CRR073310Second white 20.698
CRR073311Second white 30.036
CRR073312Silver flowering 10.183
CRR073313Silver flowering 20.103
CRR073314Silver flowering 30.242
CRR073315Gold flowering 10.379
CRR073316Gold flowering 21.274
CRR073317Gold flowering 30.357
CRR073318Tawny withering 12.558
CRR073319Tawny withering 23.034
CRR073320Tawny withering 31.959