Gene detail

Detail information of GWHGAAZE017291

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007024572.1	1.26337E-92	Nuclear transcription factor Y subunit A-3, putative isoform 2 [Theobroma cacao]
Swissprot	tr\|Q93ZH2\|NFYA3_ARATH	1E-55	Nuclear transcription factor Y subunit A-3
trEMBL	tr\|A0A061GJG8\|A0A061GJG8_THECC	5E-93	Nuclear transcription factor Y subunit A-3, putative isoform 2 {ECO:0000313\|EMBL:EOY27194.1}
TAIR10	AT1G72830.2	2E-42	nuclear factor Y, subunit A3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	3942127	3947960	+
GWHAAZE00000005	mRNA	3942127	3947960	+
GWHAAZE00000005	exon	3942127	3942430	+
GWHAAZE00000005	exon	3943803	3943906	+
GWHAAZE00000005	exon	3944013	3944081	+
GWHAAZE00000005	exon	3946858	3947036	+
GWHAAZE00000005	exon	3947113	3947155	+
GWHAAZE00000005	exon	3947439	3947960	+
GWHAAZE00000005	CDS	3942127	3942430	+
GWHAAZE00000005	CDS	3943803	3943906	+
GWHAAZE00000005	CDS	3944013	3944081	+
GWHAAZE00000005	CDS	3946858	3947036	+
GWHAAZE00000005	CDS	3947113	3947155	+
GWHAAZE00000005	CDS	3947439	3947807	+
GWHAAZE00000005	three_prime_UTR	3947808	3947960	+

Transcript Sequence
>GWHTAAZE017311 ATGCAAGATTTGCTTAAGAGAGATTCAGATATGAATGCAGGCCATTCCACTGCCCCACATATTGTTGGTTTCCCATCTTGGTGGACTTGTACCGAATCGCAAATTCAACAATCATCCCTCTCCAACAATTTAACGTTGAAGATGGCTACACTACCCTCACATTGTCAAAGTGCCAAGCAGTTGACTTTTCAATTTCAAGACCAGGACTCATCTTCAACTCAATCAACTGATCAATCTTACCCTGAAGTGGCCAGTGTAGGGGAAAGTAACCCATGTTGGCAAACGCTAATTACAGTGCTAGCAGGATATCATCTTACTCAAGCAAAGCCTGAAGATGTTCACACTAAATCAGCAATTGGAGCTCAGGATAATGTCCTGGCTCCTCTTGTTGATTACAGACAGCCATTTGGTACCGTTCCACTTTCCTCTCCCGATCCATATGGTGGGTTACTTGCTGCTTATGGGCCACAAGCTGTGGTTCATCATCCCCAAATGATAGACATGGTTGCGTCAACAACTAGAGTGCCACTGCCTCTTGATCATCTTGCACAAGACGAACCAATATATGTCAACGCAAAACAGTACCATGCAATTCTCAGGTGGAGACGGTTCTGTGCCAAGCTCGAGGCTCAAAGCAAACTATCAAAAGTTCAAAGACCTGTTAAGTTGAGAGAGACAACACACAATTGGCATGGGACTCCTTATCTCCATGAGTGTCGACATCTTCACGCTATGAAGAGGGCTAGAGGATCTGGTGGTCGATTTCCGAACATGAATAAGATAGAAGAATCTAAGACCGATGGCTCTGTCAATGGACGAGATGTCCTGGGCTCGGCTCGGCTTCAATTAGCCACAAAACTGCCCGTATCAGAAGTTCATCACCATGAAAACCATCAAGATGCTTTGATGAACTCTTGCTCCGATATCACGAGTGTCCCCAACAGTGAAAGCATCTTCAGCCACGAAGAATTCAGGTTATCTGTTTACTCTTCTCGTGTTGGTGGGTCCATGCAAGGTGGTGGTGATATGCTCAGCAGGAATAACCACTCTCTCTCCGTCCATCAGTGAGAGAACAAAATCTGAATCAGTGACCAGAGAATGTGGTTGCCGGCAAAAAAGGGAAGTCATCCTTGGCTATGTATATTTGACGCGCCTACTTATGCTTTGTTAATTACTTGTCAACGCACTAGGGAAGGGAAAATGATTGAAGAGGTTCTATTT

Network for GWHGAAZE017291

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02045.16	CBFB_NFYA	186	255	1.10E-19

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	NF-YA

KEGG pathway

KO	Enzyme	pathway	mapID
K08064	NFYA, HAP2	Antigen processing and presentation	map04612

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003700	molecular_function	DNA-binding transcription factor activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	2.368
	SRR3591707	mature leaf	4.070
	SRR3591708	Shoot apex	1.151
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.074
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.018
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.078
	SRR8316896	Juvenile bud stage	0.067
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.052
	SRR8316900	Third green stage	0.054
	SRR8316901	Third green stage	0.009
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.057
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.329
	SRR8316904	Silver flowering stage	0.935
	SRR8316905	Silver flowering stage	0.415
	SRR8316906	Gold flowering stage	0.712
	SRR8316907	Gold flowering stage	0.544
	SRR8316908	Gold flowering stage	0.562
SRP132670	SRR6706286	Control	0.144
	SRR6706287	Light intensity 50%	0.151
	SRR6706288	Light intensity 20%	0.015
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.110
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.045
	CNS0095595	Whole white alabastrum(diploid) 2	0.039
	CNS0095596	Whole white alabastrum(diploid) 3	0.003
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.036
	CNS0095599	Silvery flower (diploied) 2	0.009
	CNS0095600	Silvery flower (diploied) 3	0.052
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.077
	CNS0095603	Golden flower (diploid) 3	0.083
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.154
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.232
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.310
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.067
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (diploied) 1	0.191
	CNS0095611	Silvery flower (diploied) 2	0.075
	CNS0095612	Silvery flower (diploied) 3	0.444
	CNS0095613	Golden flower (tetraploid) 1	0.285
	CNS0095614	Golden flower (tetraploid) 2	0.042
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.483
	CRR073298	Stem 2	0.225
	CRR073299	Stem 3	0.042
	CRR073300	Leaf 1	0.077
	CRR073301	Leaf 2	0.074
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.728
	CRR073307	Third green 2	0.473
	CRR073308	Third green 3	1.080
	CRR073309	Second white 1	0.285
	CRR073310	Second white 2	0.728
	CRR073311	Second white 3	0.801
	CRR073312	Silver flowering 1	0.589
	CRR073313	Silver flowering 2	0.211
	CRR073314	Silver flowering 3	0.289
	CRR073315	Gold flowering 1	0.543
	CRR073316	Gold flowering 2	1.136
	CRR073317	Gold flowering 3	0.409
	CRR073318	Tawny withering 1	0.263
	CRR073319	Tawny withering 2	0.936
	CRR073320	Tawny withering 3	0.349