Detail information of GWHGAAZE017300


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDO97890.10unnamed protein product [Coffea canephora]
Swissprottr|Q9LNQ4|ALA4_ARATH0Putative phospholipid-transporting ATPase 4
trEMBLtr|A0A068TNH7|A0A068TNH7_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_2 {ECO:0000313|EMBL:CDO97890.1}
TAIR10AT1G17500.10ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene41357334141137-
GWHAAZE00000005mRNA41357334141137-
GWHAAZE00000005exon41357334136389-
GWHAAZE00000005exon41366804136871-
GWHAAZE00000005exon41369574137055-
GWHAAZE00000005exon41377454137870-
GWHAAZE00000005exon41380094138218-
GWHAAZE00000005exon41383184138402-
GWHAAZE00000005exon41385144138602-
GWHAAZE00000005exon41387074138983-
GWHAAZE00000005exon41390944139204-
GWHAAZE00000005exon41393124141137-
GWHAAZE00000005CDS41393124141137-
GWHAAZE00000005CDS41390944139204-
GWHAAZE00000005CDS41387074138983-
GWHAAZE00000005CDS41385144138602-
GWHAAZE00000005CDS41383184138402-
GWHAAZE00000005CDS41380094138218-
GWHAAZE00000005CDS41377454137870-
GWHAAZE00000005CDS41369574137055-
GWHAAZE00000005CDS41366804136871-
GWHAAZE00000005CDS41357334136389-
Transcript Sequence

Network for GWHGAAZE017300

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0025GO:0015914 phospholipid transport GOslim:biological_process
GO:0140326 ATPase-coupled intramembrane lipid transporter activity GOslim:molecular_function


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF16209.6PhoLip_ATPase_N421097.40E-24
PF13246.7Cation_ATPase5486531.70E-12
PF16212.6PhoLip_ATPase_C91011607.70E-87
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName
GO:0015914biological_processphospholipid transport
GO:0016021cellular_componentintegral component of membrane
GO:0000166molecular_functionnucleotide binding
GO:0000287molecular_functionmagnesium ion binding
GO:0005524molecular_functionATP binding
GO:0140326molecular_functionATPase-coupled intramembrane lipid transporter activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf16.118
SRR3591706second leaf8.044
SRR3591707mature leaf9.363
SRR3591708Shoot apex13.046
SRR3591709Stem14.870
SRR3591710White floral bud15.431
SRR3591711White flower19.171
SRR3591712Green floral bud14.780
SRR3591713Yellow flower12.108
SRP173429 SRR8316895Juvenile bud stage 9.031
SRR8316896Juvenile bud stage 12.175
SRR8316897Juvenile bud stage 6.078
SRR8316894Third green stage 4.827
SRR8316900Third green stage 10.050
SRR8316901Third green stage 11.769
SRR8316898Complete white stage 3.033
SRR8316899Complete white stage 21.306
SRR8316903Complete white stage 6.346
SRR8316902Silver flowering stage6.502
SRR8316904Silver flowering stage6.006
SRR8316905Silver flowering stage2.643
SRR8316906Gold flowering stage 7.917
SRR8316907Gold flowering stage 8.403
SRR8316908Gold flowering stage 10.572
SRP132670SRR6706286Control10.575
SRR6706287Light intensity 50%12.149
SRR6706288Light intensity 20%12.423
CNP0000432CNS0095592Slightly white alabastrum(diploid) 19.993
CNS0095593Slightly white alabastrum(diploid) 28.837
CNS0095594Slightly white alabastrum(diploid) 39.040
CNS0095595Whole white alabastrum(diploid) 27.986
CNS0095596Whole white alabastrum(diploid) 35.027
CNS0095597Whole white alabastrum(diploid) 48.302
CNS0095598Silvery flower (diploied) 117.087
CNS0095599Silvery flower (diploied) 210.066
CNS0095600Silvery flower (diploied) 312.366
CNS0095601Golden flower (diploid) 115.416
CNS0095602Golden flower (diploid) 217.273
CNS0095603Golden flower (diploid) 315.754
CNS0095604Slightly white alabastrum(tetraploid) 17.174
CNS0095605Slightly white alabastrum(tetraploid) 26.035
CNS0095606Slightly white alabastrum(tetraploid) 315.503
CNS0095607Whole white alabastrum(tetraploid) 14.378
CNS0095608Whole white alabastrum(tetraploid) 22.984
CNS0095609Whole white alabastrum(tetraploid) 38.151
CNS0095610Silvery flower (diploied) 19.942
CNS0095611Silvery flower (diploied) 28.512
CNS0095612Silvery flower (diploied) 36.039
CNS0095613Golden flower (tetraploid) 13.734
CNS0095614Golden flower (tetraploid) 27.729
CNS0095615Golden flower (tetraploid) 35.000
CRA001975CRR073297Stem 115.586
CRR073298Stem 215.492
CRR073299Stem 313.477
CRR073300Leaf 116.310
CRR073301Leaf 213.928
CRR073302Leaf 311.076
CRR073303Juvenile bud 111.895
CRR073304Juvenile bud 26.919
CRR073305Juvenile bud 318.017
CRR073306Third green 13.822
CRR073307Third green 23.015
CRR073308Third green 35.284
CRR073309Second white 14.177
CRR073310Second white 26.473
CRR073311Second white 35.364
CRR073312Silver flowering 15.784
CRR073313Silver flowering 26.066
CRR073314Silver flowering 34.416
CRR073315Gold flowering 16.449
CRR073316Gold flowering 212.797
CRR073317Gold flowering 37.782
CRR073318Tawny withering 124.942
CRR073319Tawny withering 222.159
CRR073320Tawny withering 326.749