Gene detail

Detail information of GWHGAAZE017363

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002277538.1	1.8179E-144	PREDICTED: polyadenylate-binding protein 6-like [Vitis vinifera]
Swissprot	tr\|O04319\|PABP6_ARATH	5E-98	Polyadenylate-binding protein 6
trEMBL	tr\|A5BE57\|A5BE57_VITVI	2E-128	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN65531.1}
TAIR10	AT3G16380.1	1E-83	poly(A) binding protein 6

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	5123254	5126971	-
GWHAAZE00000005	mRNA	5123254	5126971	-
GWHAAZE00000005	exon	5126678	5126971	-
GWHAAZE00000005	exon	5125835	5126125	-
GWHAAZE00000005	exon	5124829	5125002	-
GWHAAZE00000005	exon	5124429	5124731	-
GWHAAZE00000005	exon	5124112	5124335	-
GWHAAZE00000005	exon	5123930	5124016	-
GWHAAZE00000005	exon	5123685	5123804	-
GWHAAZE00000005	exon	5123254	5123469	-
GWHAAZE00000005	five_prime_UTR	5126889	5126971	-
GWHAAZE00000005	CDS	5126678	5126888	-
GWHAAZE00000005	CDS	5125835	5126125	-
GWHAAZE00000005	CDS	5124829	5125002	-
GWHAAZE00000005	CDS	5124429	5124731	-
GWHAAZE00000005	CDS	5124112	5124335	-
GWHAAZE00000005	CDS	5123930	5124016	-
GWHAAZE00000005	CDS	5123685	5123804	-
GWHAAZE00000005	CDS	5123287	5123469	-
GWHAAZE00000005	three_prime_UTR	5123254	5123286	-

Transcript Sequence
>GWHTAAZE017383 TCTGCTCTCTGCTTTTCCTTCCATATTATCTCACTTCACTTCAATAACTTCTTGCTTTTCCGAAAACAAGACTGGTGGCAGCAATGGTGGCTCCGCCGTGTGATGATGATCATCCTCAGGGCATGGCGTCGCTGTACGTGGGTGATCTTCATCCAGAAGTGACGGAGAAGGATCTTGAAGACGCATTTTCACCCATGGGTCCATTGGTCTCTGTTCGCCTCTTTCGCCCCCCGTCATTATCCAACAACTCATCCTTCTCTTATGCTCGCATCAACTTCTCTTCTCCTTCTGACGCTTTTAAGGCCATGGCCTGCCTAAACAAAGTTGAACTCAAGGAAGTACCCATGAAGATAATGAGGTATCAGAATCACCTTCTTACAGAAAAGTTTGGCAGTGGCTCCGCCAATCTCTTTGTTAAGAATCTTGACCCTTCAATTACCAGTGCTCATTTAGAGGGTATTTTTGGCAAGTATGGGACTATACTTACATGTAAGGTGGCTGAGGGAGAGGGGAAGAGCAAGGGTTTTGGGTTTGTTCAATTTGCTTCTGAAGATTCCGCCATTTCTGCCCTTAATGCTCTCCATGCTGAAGATTTGACAGAGGATGCCCTTCGAGCAACATTTTCAGAATGCGGGAAGGTCTTCAACGTTGCCATTATGAAGGATGGTGAGGGGAAATCAAAAGGCTTTGGGTTTGTCAACTTCGAGTCCCATGAAGATGCTAGAAAGGCCATTGATGCCCTAAATGGTGTATTAATAGGATCGAAGAAATTGTTTGTGGGAAAGGCTCAGAAGAAAGCTGAAAGGGCAGAGCTCTTAAAACGCACCCATGAGGAGATGATGCTTAACCGTAGTACCACCGAGAATCTGAAGGCTCTAAATCTCTATGTCAAGAATCTCCATGTATCCATTGATGATATTAAGCTTGAAGAAATTTTCAGTGCTTTTGGACGAGTGACTTCAGTAAAAGTGATGCGCCACAATAATGGGATAAGTAAAGGATTTGGATTTGTAAGCATCTCTAGTCCAGAAGCAGCAAAGAAAGCTATGGACTCGCTAAATGGAAGTTTAGTAGAAGGAAGGTTTCTTTATGTGGCTGTTGCTCAGCGTAAAGAAGAACGCCGTAGGGAACTGCAGAGTCATTTTACTCCACGATCTTTTTATGATTCTAACTGGGAATTCTTTCCACTATATTCCAATTATTATCCTCCTCTCCCTCCAAATCCTTTCTCACAGGCAAACTCACACATATATCCTCAGAGACAACACCAAGGTCTCTACACATATTTCCAGGTTCCGATGAGGCCACAACCACAGATTCCAATGAGGCAATCACGGCAGGGGGGCACTAATGGATGGGTTTACCAACATCATCCCATGAGGTATGCTACCTCAAACTTTCCAGAGCAGGGGAAGATTTGTTATACTGAAAAAACATCAATGAAAATGGAAAGCAAGAGAAGTGGAGCTGCAGAAGTTTCTTCCAAAGGATTGCCTGGACGTGCCGCAAAGATAACTGAAATAATGTTGGAAATGGAGAAGTCGAAGATACAGAAGATACTCGACAGCCCACAATATTTGGCAATGCAAGTTATGAAGGCTGCTCAAGTTAAGGGGGCAAATCCTTGTGCTCGCGAAGCTCGTGCTGTTCATTACCAACCCAAATTTTCCCACTGAATTCATATTGCTATACGCTTGGCTACTATCTGG

Network for GWHGAAZE017363

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00076.23	RRM_1	17	84	2.60E-13
PF00076.23	RRM_1	109	168	1.90E-16
PF00076.23	RRM_1	169	230	1.50E-18
PF00076.23	RRM_1	267	335	4.10E-17

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13126	PABPC	RNA transport	map03013
		mRNA surveillance pathway	map03015
		RNA degradation	map03018

Gene Ontology

GO term	Ontology	Name
GO:0003723	molecular_function	RNA binding
GO:0003676	molecular_function	nucleic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.050
	SRR3591707	mature leaf	0.039
	SRR3591708	Shoot apex	0.114
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.526
	SRR3591711	White flower	0.188
	SRR3591712	Green floral bud	1.174
	SRR3591713	Yellow flower	0.138
SRP173429	SRR8316895	Juvenile bud stage	1.652
	SRR8316896	Juvenile bud stage	5.076
	SRR8316897	Juvenile bud stage	0.768
	SRR8316894	Third green stage	2.044
	SRR8316900	Third green stage	4.024
	SRR8316901	Third green stage	3.367
	SRR8316898	Complete white stage	0.038
	SRR8316899	Complete white stage	0.088
	SRR8316903	Complete white stage	0.037
	SRR8316902	Silver flowering stage	0.115
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.067
	SRR8316906	Gold flowering stage	0.130
	SRR8316907	Gold flowering stage	0.066
	SRR8316908	Gold flowering stage	0.082
SRP132670	SRR6706286	Control	1.267
	SRR6706287	Light intensity 50%	1.156
	SRR6706288	Light intensity 20%	1.061
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.703
	CNS0095593	Slightly white alabastrum(diploid) 2	2.379
	CNS0095594	Slightly white alabastrum(diploid) 3	3.703
	CNS0095595	Whole white alabastrum(diploid) 2	2.024
	CNS0095596	Whole white alabastrum(diploid) 3	3.044
	CNS0095597	Whole white alabastrum(diploid) 4	1.687
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.045
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.043
	CNS0095603	Golden flower (diploid) 3	0.015
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.723
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.305
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.055
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.260
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.986
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.122
	CNS0095610	Silvery flower (diploied) 1	0.128
	CNS0095611	Silvery flower (diploied) 2	0.097
	CNS0095612	Silvery flower (diploied) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.297
	CNS0095614	Golden flower (tetraploid) 2	0.073
	CNS0095615	Golden flower (tetraploid) 3	0.109
CRA001975	CRR073297	Stem 1	1.371
	CRR073298	Stem 2	1.174
	CRR073299	Stem 3	0.595
	CRR073300	Leaf 1	0.841
	CRR073301	Leaf 2	0.736
	CRR073302	Leaf 3	0.694
	CRR073303	Juvenile bud 1	0.459
	CRR073304	Juvenile bud 2	0.610
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.037
	CRR073307	Third green 2	0.146
	CRR073308	Third green 3	0.021
	CRR073309	Second white 1	0.068
	CRR073310	Second white 2	0.193
	CRR073311	Second white 3	0.470
	CRR073312	Silver flowering 1	0.038
	CRR073313	Silver flowering 2	0.268
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.151
	CRR073316	Gold flowering 2	0.159
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.148
	CRR073320	Tawny withering 3	0.000