Gene detail

Detail information of GWHGAAZE017394

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDO56957.1	4.55654E-94	hypothetical protein CISIN_1g019236mg [Citrus sinensis]
Swissprot	tr\|Q38826\|IAA8_ARATH	9E-77	Auxin-responsive protein IAA8
trEMBL	tr\|A0A067F0D3\|A0A067F0D3_CITSI	2E-94	Auxin-responsive protein {ECO:0000256\|RuleBase:RU004549}
TAIR10	AT2G22670.4	9E-63	indoleacetic acid-induced protein 8

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	5618884	5620380	-
GWHAAZE00000005	mRNA	5618884	5620380	-
GWHAAZE00000005	exon	5620131	5620380	-
GWHAAZE00000005	exon	5619897	5620038	-
GWHAAZE00000005	exon	5619597	5619658	-
GWHAAZE00000005	exon	5618884	5619386	-
GWHAAZE00000005	CDS	5620131	5620380	-
GWHAAZE00000005	CDS	5619897	5620038	-
GWHAAZE00000005	CDS	5619597	5619658	-
GWHAAZE00000005	CDS	5619349	5619386	-
GWHAAZE00000005	three_prime_UTR	5618884	5619348	-

Transcript Sequence
>GWHTAAZE017414 ATGGTTCCGTCCCTGAATAGGGCACAGGTGGTAGGATGGCCACCAATTCGATCTTTCCGGAAGAACACCATGGCCACCAACGTATCAAAGAGCGGTGATGTTGGTGAAGGAAATACTGGATCAGGTTGCGTTTATGTCAAGGTCAGCATGGATGGTGCTCCATACCTAAGGAAGGTTGACCTCAAAACCTACTCCAATTATGCACACCTCTCTTCAGCTCTTGAGAAGATGTTCAGCTGCTTTACCATCGGGCAGTGCAGCTCTCAAGGACTTCCAGGGAGAGAGGGGCTAAGTGCAAGTCGGTTAATGGATATCGTCAATTGCTCTGAATATGTGCTAACATATGAAGACAAGGACGGTGATTGGATGCTTGTTGGGGATGTTCCTTGGGATATGTTCACTGAATCATGCAAGAGATTAAGGATCATGAAAGGCTCAGAGGCAATTGGGCTAGCTCCGAGGGCGATGGAGAAGTGCAAGAACCGTAGTTAGATGCTGGCAAAAACCAGAAAAAGAAGAGGCATTTTGAATGAACACCAAAAGGGAATGAATTAAAGTTGGAAGCACCCTTTTCAAGAATTTTATATATGATGATGATGCTTAAAATTAAATGTTTTAAGTTTGTAGTAATTGATGTGGATGATGGAAGGAATCTTGATTTACTAGGAAGAAGACATAACATAGCTGGAGAAGATCCAGATGTTTGGTTATTATTCTAGCAGTGTTTGTGTGTGTACTTAAAATTTGCTATGTATATTGGAGTGCTAGCTGTTTTCCTATTTCCCATTCTCACCAATCTCCTATTCAACAACTAGTTTTGGTAGTTGTCACACGAGAATGGCTCTCGATTTGTGCCTGTGTTGGATAAAAGTTTCCGACCTGCCTGATTCAAACCAGCGACCTAAGGATTTCCTGTCAGGTGATGCCCACTACAGTCCACCGCCCTACCAACTGAGC

Network for GWHGAAZE017394

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02309.17	AUX_IAA	6	154	2.50E-79

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	AUX/IAA

KEGG pathway

KO	Enzyme	pathway	mapID
K14484	IAA	Plant hormone signal transduction	map04075

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	130.346
	SRR3591706	second leaf	24.113
	SRR3591707	mature leaf	10.793
	SRR3591708	Shoot apex	94.902
	SRR3591709	Stem	121.059
	SRR3591710	White floral bud	32.315
	SRR3591711	White flower	37.597
	SRR3591712	Green floral bud	28.447
	SRR3591713	Yellow flower	6.218
SRP173429	SRR8316895	Juvenile bud stage	28.017
	SRR8316896	Juvenile bud stage	30.232
	SRR8316897	Juvenile bud stage	11.054
	SRR8316894	Third green stage	12.673
	SRR8316900	Third green stage	28.423
	SRR8316901	Third green stage	24.308
	SRR8316898	Complete white stage	2.196
	SRR8316899	Complete white stage	54.812
	SRR8316903	Complete white stage	11.325
	SRR8316902	Silver flowering stage	0.637
	SRR8316904	Silver flowering stage	1.852
	SRR8316905	Silver flowering stage	0.608
	SRR8316906	Gold flowering stage	3.030
	SRR8316907	Gold flowering stage	1.683
	SRR8316908	Gold flowering stage	28.363
SRP132670	SRR6706286	Control	37.717
	SRR6706287	Light intensity 50%	34.650
	SRR6706288	Light intensity 20%	32.438
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	47.413
	CNS0095593	Slightly white alabastrum(diploid) 2	81.062
	CNS0095594	Slightly white alabastrum(diploid) 3	34.087
	CNS0095595	Whole white alabastrum(diploid) 2	48.736
	CNS0095596	Whole white alabastrum(diploid) 3	7.856
	CNS0095597	Whole white alabastrum(diploid) 4	31.194
	CNS0095598	Silvery flower (diploied) 1	104.209
	CNS0095599	Silvery flower (diploied) 2	82.477
	CNS0095600	Silvery flower (diploied) 3	15.999
	CNS0095601	Golden flower (diploid) 1	76.293
	CNS0095602	Golden flower (diploid) 2	27.179
	CNS0095603	Golden flower (diploid) 3	27.795
	CNS0095604	Slightly white alabastrum(tetraploid) 1	43.820
	CNS0095605	Slightly white alabastrum(tetraploid) 2	36.756
	CNS0095606	Slightly white alabastrum(tetraploid) 3	96.834
	CNS0095607	Whole white alabastrum(tetraploid) 1	40.098
	CNS0095608	Whole white alabastrum(tetraploid) 2	21.173
	CNS0095609	Whole white alabastrum(tetraploid) 3	9.439
	CNS0095610	Silvery flower (diploied) 1	5.865
	CNS0095611	Silvery flower (diploied) 2	17.522
	CNS0095612	Silvery flower (diploied) 3	4.326
	CNS0095613	Golden flower (tetraploid) 1	2.021
	CNS0095614	Golden flower (tetraploid) 2	3.122
	CNS0095615	Golden flower (tetraploid) 3	0.462
CRA001975	CRR073297	Stem 1	47.247
	CRR073298	Stem 2	50.742
	CRR073299	Stem 3	51.890
	CRR073300	Leaf 1	49.470
	CRR073301	Leaf 2	74.247
	CRR073302	Leaf 3	42.561
	CRR073303	Juvenile bud 1	52.458
	CRR073304	Juvenile bud 2	5.314
	CRR073305	Juvenile bud 3	88.619
	CRR073306	Third green 1	2.059
	CRR073307	Third green 2	4.878
	CRR073308	Third green 3	6.883
	CRR073309	Second white 1	1.649
	CRR073310	Second white 2	0.727
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.060
	CRR073313	Silver flowering 2	0.341
	CRR073314	Silver flowering 3	0.221
	CRR073315	Gold flowering 1	13.274
	CRR073316	Gold flowering 2	14.141
	CRR073317	Gold flowering 3	15.450
	CRR073318	Tawny withering 1	43.145
	CRR073319	Tawny withering 2	60.936
	CRR073320	Tawny withering 3	65.127