Gene detail

Detail information of GWHGAAZE017447

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AEW67998.1	0	gibberellin 3 oxidase 1 [Castanea mollissima]
Swissprot	tr\|O24648\|G3OX_PEA	2E-174	Gibberellin 3-beta-dioxygenase 1
trEMBL	tr\|G9I0U8\|G9I0U8_9ROSI	0	Gibberellin 3 oxidase 1 {ECO:0000313\|EMBL:AEW67998.1}
TAIR10	AT1G15550.1	6E-117	gibberellin 3-oxidase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	6432230	6433716	+
GWHAAZE00000005	mRNA	6432230	6433716	+
GWHAAZE00000005	exon	6432230	6432702	+
GWHAAZE00000005	exon	6433086	6433716	+
GWHAAZE00000005	CDS	6432230	6432702	+
GWHAAZE00000005	CDS	6433086	6433716	+

Transcript Sequence
>GWHTAAZE017467 ATGCCTTCAAGAATCTCAGATGACCTCAAACCCCACTCAGGCATCCTTGACAAACACTTGGACCTTAACTCAGTGAAAGAACTACCCGACTCGCATGCATGGGCATCGCTTGACGGATTACCCTCGGGGGACTCTAGCATTACAGAGTCAGTCCCTGTTATAGACCTTGAGGGTCCAAATACCATAGAACTCGTGGGCCATGCATGCAGAACATGGGGTGTATTCCAAGTAATAAACCATGGGATCTCCAAGAACCTTCTCGATCGCATGGAAGCTTCTGGTAGGAAGCTTTTTTCTCTTCCTATCCAACAAAAGCTAAAAGCCGCCCGTGCCCCAGATGGGGTATCTGGGTATGGGGTGGCCCGGATTTCTTCTTTCTTTCCCAAGCTCATGTGGTCCGAAGGGTTCACCATCCTTGGTTCACCGCTCGAACATGCACGCCAACTTTGGCCTCAAGATTATAGCGAATTCTGTGATGTAATCCAAGAATATGAGAAGGAGATGAAGAGGCTAGCAGGGAGGCTGATGTGGCTAATGCTTGGGTCATTGGGCATAGCCACTGAAGATGTTAAATGGGCAGGCCCAAAGGAAGAATTCAATGCATCATCTGCAGCCTTACAGCTCAACTCTTACCCAGCTTGTCCGGATCCGGAACGGGCCATGGGTCTAGCTGCTCACACCGATTCCACCCTGCTCACCCTCCTCCACCAAAACAACACAAGTGGGTTACAGGTCCATAGGGAAGGAAGCGGGTGGGTCACGGTTGATCCACTCCCTGGGGCCCTAGTGGTCAACATAGGAGACCTATTCCATATACTTTCAAATGGATTGTACCCAAGTGTCCTCCACCGAGCCGTGGTTAACCGGACCCACCATCGTCTCTCTATAGCCTACCTCTATGGTCCACCGTCTAGTGTTCAAATTTCACCACTCTCCAAATTAGTAGATAATGGTCACCCTCCCCTTTATAGACCAGTGACTTGGAGTGAGTACCTCGGCACCAAGGCAAAGCACTTCAACAAGGCACTCTCGTCTGTTAGGCTCTGCGTTCCTTTAAATGGATTTGGAGATACAAATGATCAGAATAGTGTAAAAGTCGGCTAG

Network for GWHGAAZE017447

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14226.7	DIOX_N	51	152	7.20E-20
PF03171.21	2OG-FeII_Oxy	206	302	1.10E-27

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K04124	E1.14.11.15	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Diterpenoid biosynthesis	map00904

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.546
	SRR3591706	second leaf	4.389
	SRR3591707	mature leaf	5.863
	SRR3591708	Shoot apex	4.520
	SRR3591709	Stem	6.700
	SRR3591710	White floral bud	9.238
	SRR3591711	White flower	4.511
	SRR3591712	Green floral bud	6.274
	SRR3591713	Yellow flower	2.186
SRP173429	SRR8316895	Juvenile bud stage	7.187
	SRR8316896	Juvenile bud stage	9.162
	SRR8316897	Juvenile bud stage	3.199
	SRR8316894	Third green stage	6.751
	SRR8316900	Third green stage	13.426
	SRR8316901	Third green stage	12.506
	SRR8316898	Complete white stage	12.553
	SRR8316899	Complete white stage	10.899
	SRR8316903	Complete white stage	21.646
	SRR8316902	Silver flowering stage	12.222
	SRR8316904	Silver flowering stage	14.324
	SRR8316905	Silver flowering stage	8.552
	SRR8316906	Gold flowering stage	21.595
	SRR8316907	Gold flowering stage	21.298
	SRR8316908	Gold flowering stage	16.726
SRP132670	SRR6706286	Control	7.534
	SRR6706287	Light intensity 50%	9.648
	SRR6706288	Light intensity 20%	8.387
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.738
	CNS0095593	Slightly white alabastrum(diploid) 2	14.324
	CNS0095594	Slightly white alabastrum(diploid) 3	11.347
	CNS0095595	Whole white alabastrum(diploid) 2	14.133
	CNS0095596	Whole white alabastrum(diploid) 3	10.956
	CNS0095597	Whole white alabastrum(diploid) 4	13.753
	CNS0095598	Silvery flower (diploied) 1	28.244
	CNS0095599	Silvery flower (diploied) 2	17.519
	CNS0095600	Silvery flower (diploied) 3	7.328
	CNS0095601	Golden flower (diploid) 1	17.416
	CNS0095602	Golden flower (diploid) 2	4.956
	CNS0095603	Golden flower (diploid) 3	4.886
	CNS0095604	Slightly white alabastrum(tetraploid) 1	31.793
	CNS0095605	Slightly white alabastrum(tetraploid) 2	21.712
	CNS0095606	Slightly white alabastrum(tetraploid) 3	48.868
	CNS0095607	Whole white alabastrum(tetraploid) 1	23.450
	CNS0095608	Whole white alabastrum(tetraploid) 2	14.626
	CNS0095609	Whole white alabastrum(tetraploid) 3	12.981
	CNS0095610	Silvery flower (diploied) 1	8.812
	CNS0095611	Silvery flower (diploied) 2	7.420
	CNS0095612	Silvery flower (diploied) 3	10.268
	CNS0095613	Golden flower (tetraploid) 1	8.337
	CNS0095614	Golden flower (tetraploid) 2	9.316
	CNS0095615	Golden flower (tetraploid) 3	4.014
CRA001975	CRR073297	Stem 1	6.349
	CRR073298	Stem 2	9.003
	CRR073299	Stem 3	1.896
	CRR073300	Leaf 1	10.089
	CRR073301	Leaf 2	11.496
	CRR073302	Leaf 3	5.203
	CRR073303	Juvenile bud 1	5.255
	CRR073304	Juvenile bud 2	3.322
	CRR073305	Juvenile bud 3	7.919
	CRR073306	Third green 1	70.348
	CRR073307	Third green 2	66.155
	CRR073308	Third green 3	47.566
	CRR073309	Second white 1	15.859
	CRR073310	Second white 2	5.325
	CRR073311	Second white 3	1.226
	CRR073312	Silver flowering 1	0.639
	CRR073313	Silver flowering 2	0.668
	CRR073314	Silver flowering 3	0.125
	CRR073315	Gold flowering 1	2.206
	CRR073316	Gold flowering 2	2.571
	CRR073317	Gold flowering 3	0.799
	CRR073318	Tawny withering 1	2.332
	CRR073319	Tawny withering 2	3.757
	CRR073320	Tawny withering 3	2.219