Detail information of GWHGAAZE017479


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002285369.10PREDICTED: uncharacterized protein LOC100253140 [Vitis vinifera]
trEMBLtr|F6HX95|F6HX95_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB59565.1}
TAIR10AT1G80210.12E-112Mov34/MPN/PAD-1 family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene68611036866584-
GWHAAZE00000005mRNA68611036866584-
GWHAAZE00000005exon68611036861549-
GWHAAZE00000005exon68619186861972-
GWHAAZE00000005exon68620536862133-
GWHAAZE00000005exon68622336862391-
GWHAAZE00000005exon68629206863104-
GWHAAZE00000005exon68641906864408-
GWHAAZE00000005exon68644846864569-
GWHAAZE00000005exon68665006866584-
GWHAAZE00000005CDS68665006866584-
GWHAAZE00000005CDS68644846864569-
GWHAAZE00000005CDS68641906864408-
GWHAAZE00000005CDS68629206863104-
GWHAAZE00000005CDS68622336862391-
GWHAAZE00000005CDS68620536862133-
GWHAAZE00000005CDS68619186861972-
GWHAAZE00000005CDS68613376861549-
GWHAAZE00000005three_prime_UTR68611036861336-
Transcript Sequence

Network for GWHGAAZE017479

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01398.22JAB6408.80E-13
PF18110.2BRCC36_C2183013.60E-24
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyJAMM

KEGG pathway

KO Enzyme pathway mapID
K11864BRCC3, BRCC36 Homologous recombination map03440
NOD-like receptor signaling pathwaymap04621

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf24.863
SRR3591706second leaf12.922
SRR3591707mature leaf15.463
SRR3591708Shoot apex27.606
SRR3591709Stem17.632
SRR3591710White floral bud20.746
SRR3591711White flower25.179
SRR3591712Green floral bud24.429
SRR3591713Yellow flower19.908
SRP173429 SRR8316895Juvenile bud stage 18.683
SRR8316896Juvenile bud stage 24.365
SRR8316897Juvenile bud stage 11.356
SRR8316894Third green stage 9.513
SRR8316900Third green stage 28.760
SRR8316901Third green stage 25.890
SRR8316898Complete white stage 9.835
SRR8316899Complete white stage 37.821
SRR8316903Complete white stage 16.180
SRR8316902Silver flowering stage8.486
SRR8316904Silver flowering stage12.379
SRR8316905Silver flowering stage5.748
SRR8316906Gold flowering stage 14.699
SRR8316907Gold flowering stage 17.030
SRR8316908Gold flowering stage 14.162
SRP132670SRR6706286Control19.421
SRR6706287Light intensity 50%24.393
SRR6706288Light intensity 20%23.390
CNP0000432CNS0095592Slightly white alabastrum(diploid) 122.094
CNS0095593Slightly white alabastrum(diploid) 224.799
CNS0095594Slightly white alabastrum(diploid) 320.674
CNS0095595Whole white alabastrum(diploid) 225.414
CNS0095596Whole white alabastrum(diploid) 322.320
CNS0095597Whole white alabastrum(diploid) 421.740
CNS0095598Silvery flower (diploied) 122.199
CNS0095599Silvery flower (diploied) 221.474
CNS0095600Silvery flower (diploied) 326.528
CNS0095601Golden flower (diploid) 120.584
CNS0095602Golden flower (diploid) 226.154
CNS0095603Golden flower (diploid) 323.794
CNS0095604Slightly white alabastrum(tetraploid) 126.465
CNS0095605Slightly white alabastrum(tetraploid) 223.899
CNS0095606Slightly white alabastrum(tetraploid) 337.763
CNS0095607Whole white alabastrum(tetraploid) 116.863
CNS0095608Whole white alabastrum(tetraploid) 216.527
CNS0095609Whole white alabastrum(tetraploid) 326.352
CNS0095610Silvery flower (diploied) 127.325
CNS0095611Silvery flower (diploied) 235.860
CNS0095612Silvery flower (diploied) 322.403
CNS0095613Golden flower (tetraploid) 118.473
CNS0095614Golden flower (tetraploid) 225.489
CNS0095615Golden flower (tetraploid) 313.716
CRA001975CRR073297Stem 128.915
CRR073298Stem 230.962
CRR073299Stem 329.890
CRR073300Leaf 129.812
CRR073301Leaf 227.132
CRR073302Leaf 329.353
CRR073303Juvenile bud 135.033
CRR073304Juvenile bud 226.984
CRR073305Juvenile bud 336.256
CRR073306Third green 110.776
CRR073307Third green 28.190
CRR073308Third green 311.578
CRR073309Second white 113.512
CRR073310Second white 210.478
CRR073311Second white 38.977
CRR073312Silver flowering 18.786
CRR073313Silver flowering 28.902
CRR073314Silver flowering 36.422
CRR073315Gold flowering 118.833
CRR073316Gold flowering 224.719
CRR073317Gold flowering 314.437
CRR073318Tawny withering 124.620
CRR073319Tawny withering 219.490
CRR073320Tawny withering 326.363