Detail information of GWHGAAZE017525


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010654813.10PREDICTED: protein FAR1-RELATED SEQUENCE 6-like [Vitis vinifera]
Swissprottr|Q9SSQ4|FRS6_ARATH0Protein FAR1-RELATED SEQUENCE 6
trEMBLtr|A5C494|A5C494_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CAN75286.1}
TAIR10AT1G52520.10FAR1-related sequence 6

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene74655937467605-
GWHAAZE00000005mRNA74655937467605-
GWHAAZE00000005exon74655937467605-
GWHAAZE00000005CDS74655937467605-
Transcript Sequence

Network for GWHGAAZE017525

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03101.16FAR1601416.50E-21
PF10551.10MULE2653571.90E-20
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyFAR1

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0008270molecular_functionzinc ion binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf7.153
SRR3591706second leaf5.522
SRR3591707mature leaf5.999
SRR3591708Shoot apex7.459
SRR3591709Stem9.443
SRR3591710White floral bud5.617
SRR3591711White flower8.441
SRR3591712Green floral bud8.115
SRR3591713Yellow flower7.808
SRP173429 SRR8316895Juvenile bud stage 5.924
SRR8316896Juvenile bud stage 9.357
SRR8316897Juvenile bud stage 2.673
SRR8316894Third green stage 3.172
SRR8316900Third green stage 9.345
SRR8316901Third green stage 7.703
SRR8316898Complete white stage 3.167
SRR8316899Complete white stage 12.425
SRR8316903Complete white stage 5.166
SRR8316902Silver flowering stage3.147
SRR8316904Silver flowering stage4.935
SRR8316905Silver flowering stage2.202
SRR8316906Gold flowering stage 8.788
SRR8316907Gold flowering stage 8.653
SRR8316908Gold flowering stage 6.708
SRP132670SRR6706286Control5.012
SRR6706287Light intensity 50%4.584
SRR6706288Light intensity 20%5.100
CNP0000432CNS0095592Slightly white alabastrum(diploid) 16.958
CNS0095593Slightly white alabastrum(diploid) 25.750
CNS0095594Slightly white alabastrum(diploid) 36.553
CNS0095595Whole white alabastrum(diploid) 25.060
CNS0095596Whole white alabastrum(diploid) 35.848
CNS0095597Whole white alabastrum(diploid) 46.070
CNS0095598Silvery flower (diploied) 16.799
CNS0095599Silvery flower (diploied) 27.155
CNS0095600Silvery flower (diploied) 38.687
CNS0095601Golden flower (diploid) 15.639
CNS0095602Golden flower (diploid) 29.440
CNS0095603Golden flower (diploid) 310.112
CNS0095604Slightly white alabastrum(tetraploid) 16.833
CNS0095605Slightly white alabastrum(tetraploid) 26.060
CNS0095606Slightly white alabastrum(tetraploid) 311.435
CNS0095607Whole white alabastrum(tetraploid) 15.332
CNS0095608Whole white alabastrum(tetraploid) 24.889
CNS0095609Whole white alabastrum(tetraploid) 38.386
CNS0095610Silvery flower (diploied) 110.448
CNS0095611Silvery flower (diploied) 210.621
CNS0095612Silvery flower (diploied) 37.249
CNS0095613Golden flower (tetraploid) 15.260
CNS0095614Golden flower (tetraploid) 28.646
CNS0095615Golden flower (tetraploid) 36.031
CRA001975CRR073297Stem 14.847
CRR073298Stem 25.195
CRR073299Stem 34.841
CRR073300Leaf 14.770
CRR073301Leaf 24.259
CRR073302Leaf 34.795
CRR073303Juvenile bud 14.227
CRR073304Juvenile bud 24.142
CRR073305Juvenile bud 34.238
CRR073306Third green 10.481
CRR073307Third green 20.731
CRR073308Third green 31.113
CRR073309Second white 10.319
CRR073310Second white 21.602
CRR073311Second white 31.284
CRR073312Silver flowering 11.120
CRR073313Silver flowering 20.608
CRR073314Silver flowering 31.302
CRR073315Gold flowering 12.634
CRR073316Gold flowering 23.727
CRR073317Gold flowering 30.543
CRR073318Tawny withering 14.516
CRR073319Tawny withering 24.014
CRR073320Tawny withering 33.090