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Detail information of GWHGAAZE017560
Functional Annotation
Database
Orthologs
E value
Annotation
Nr
XP_011020623.1
0
PREDICTED: probable CCR4-associated factor 1 homolog 6 [Populus euphratica]
Swissprot
tr|Q9SAI2|CAF1F_ARATH
4E-166
Probable CCR4-associated factor 1 homolog 6
trEMBL
tr|F6I3B6|F6I3B6_VITVI
0
Putative uncharacterized protein {ECO:0000313|EMBL:CCB61434.1}
TAIR10
AT1G80780.3
1E-131
Polynucleotidyl transferase, ribonuclease H-like superfamily protein
Location And Transcript Sequence
(JBrowse)
Scaffold
Type
Start
End
Strand
GWHAAZE00000005
gene
7960789
7961598
-
GWHAAZE00000005
mRNA
7960789
7961598
-
GWHAAZE00000005
exon
7960789
7961598
-
GWHAAZE00000005
CDS
7960789
7961598
-
Transcript Sequence
>GWHTAAZE017580 ATGTCGCTTTTACCCAAAAGCGATTCGATCCAGATTCGAGAAGTGTGGAATGACAATCTGGAAGAAGAGTTTGATTTGATTCGTGATGTTGTTGATGATTTTCCTTATATCGCTATGGACACGGAGTTCCCCGGGATTGTCCTTCGTCCGGTGGGGAACTTCAAGAACAGTAACGACTATCATTACCAAACTTTGAAGGACAACGTAGACATGTTGAAATTGATCCAATTAGGGCTTACTTTTTCCGATGAGCAAGGGAATTTACCTAAATGTGGCACTGATAAGTATTGCATCTGGCAATTCAACTTCCGCGAGTTCAATGTCAATGAAGATGTGTCTGCTAGTGATTCCATTGAGCTTTTGAGGCAGAGTGGTATTGATTTCAAGAAGAACAATGAAAATGGAATCGATGCACAAAGATTTGGGGAGCTCTTGATGTCTTCTGGGATTGTGTTGAATGATAATGTATACTGGGTTACCTTTCACAGTGGATATGATTTTGGGTACTTGCTTAAGCTTTTGACTTGCCAGAATTTGCCCGAGACACAAGCTGGGTTCTTTAACTTGATCAATCTCTACTTTCCTACCATTTATGACATTAAGCATCTGATGAAGTTCTGTAACAGTCTTCATGGTGGGTTGAACAAGCTTGCAGAGTTATTGGAAGTTCAGAGAATTGGTGTTTGTCACCAGGCGGGTTCGGATAGTTTGCTTACAGCTTGTACATTCAGGAAGTTGAAAGACAACTTCTTTAGCGGTTCTTTGGATAAATATTCTGGTGTCTTGTATGGTCTAGGTGTTGAGCTTTGA
Network for GWHGAAZE017560
Network category
Network
Top300 PCC genelist
Coexpression Positive
Network
Top300 PCC genelist
Coexpression Negative
Network
Top300 PCC genelist
Functional Module
Module ID
Function Annotation
Protein Structure
Pfam accession
Pfam name
Alignment start
Alignment end
E-value
PF04857.21
CAF1
15
136
2.70E-13
PF04857.21
CAF1
161
243
1.70E-06
Protein Sequence
>GWHPAAZE017570 MSLLPKSDSIQIREVWNDNLEEEFDLIRDVVDDFPYIAMDTEFPGIVLRPVGNFKNSNDYHYQTLKDNVDMLKLIQLGLTFSDEQGNLPKCGTDKYCIWQFNFREFNVNEDVSASDSIELLRQSGIDFKKNNENGIDAQRFGELLMSSGIVLNDNVYWVTFHSGYDFGYLLKLLTCQNLPETQAGFFNLINLYFPTIYDIKHLMKFCNSLHGGLNKLAELLEVQRIGVCHQAGSDSLLTACTFRKLKDNFFSGSLDKYSGVLYGLGVEL
Gene family
Gene family
subfamily
--
--
KEGG pathway
KO
Enzyme
pathway
mapID
K12581
CNOT7_8, CAF1, POP2
RNA degradation
map03018
Gene Ontology
GO term
Ontology
Name
GO:0003676
molecular_function
nucleic acid binding
Expression pattern
Expression pattern detail
SRP
Sample
Description
TPM
SRP075780
SRR3591705
youngest leaf
46.988
SRR3591706
second leaf
26.302
SRR3591707
mature leaf
31.555
SRR3591708
Shoot apex
39.463
SRR3591709
Stem
52.778
SRR3591710
White floral bud
82.329
SRR3591711
White flower
95.970
SRR3591712
Green floral bud
89.491
SRR3591713
Yellow flower
119.335
SRP173429
SRR8316895
Juvenile bud stage
30.411
SRR8316896
Juvenile bud stage
39.846
SRR8316897
Juvenile bud stage
20.812
SRR8316894
Third green stage
18.763
SRR8316900
Third green stage
61.136
SRR8316901
Third green stage
60.442
SRR8316898
Complete white stage
38.358
SRR8316899
Complete white stage
92.273
SRR8316903
Complete white stage
51.861
SRR8316902
Silver flowering stage
39.474
SRR8316904
Silver flowering stage
44.255
SRR8316905
Silver flowering stage
20.428
SRR8316906
Gold flowering stage
81.281
SRR8316907
Gold flowering stage
69.261
SRR8316908
Gold flowering stage
86.666
SRP132670
SRR6706286
Control
29.329
SRR6706287
Light intensity 50%
29.331
SRR6706288
Light intensity 20%
30.968
CNP0000432
CNS0095592
Slightly white alabastrum(diploid) 1
47.999
CNS0095593
Slightly white alabastrum(diploid) 2
53.847
CNS0095594
Slightly white alabastrum(diploid) 3
59.530
CNS0095595
Whole white alabastrum(diploid) 2
54.741
CNS0095596
Whole white alabastrum(diploid) 3
60.900
CNS0095597
Whole white alabastrum(diploid) 4
60.859
CNS0095598
Silvery flower (diploied) 1
58.161
CNS0095599
Silvery flower (diploied) 2
56.346
CNS0095600
Silvery flower (diploied) 3
89.948
CNS0095601
Golden flower (diploid) 1
59.844
CNS0095602
Golden flower (diploid) 2
73.201
CNS0095603
Golden flower (diploid) 3
70.679
CNS0095604
Slightly white alabastrum(tetraploid) 1
57.765
CNS0095605
Slightly white alabastrum(tetraploid) 2
49.279
CNS0095606
Slightly white alabastrum(tetraploid) 3
57.967
CNS0095607
Whole white alabastrum(tetraploid) 1
60.742
CNS0095608
Whole white alabastrum(tetraploid) 2
58.967
CNS0095609
Whole white alabastrum(tetraploid) 3
63.483
CNS0095610
Silvery flower (diploied) 1
74.816
CNS0095611
Silvery flower (diploied) 2
77.621
CNS0095612
Silvery flower (diploied) 3
77.584
CNS0095613
Golden flower (tetraploid) 1
75.231
CNS0095614
Golden flower (tetraploid) 2
70.616
CNS0095615
Golden flower (tetraploid) 3
95.057
CRA001975
CRR073297
Stem 1
29.728
CRR073298
Stem 2
29.365
CRR073299
Stem 3
29.384
CRR073300
Leaf 1
37.289
CRR073301
Leaf 2
31.698
CRR073302
Leaf 3
41.620
CRR073303
Juvenile bud 1
39.103
CRR073304
Juvenile bud 2
43.985
CRR073305
Juvenile bud 3
35.529
CRR073306
Third green 1
37.151
CRR073307
Third green 2
42.616
CRR073308
Third green 3
36.738
CRR073309
Second white 1
66.118
CRR073310
Second white 2
56.926
CRR073311
Second white 3
45.090
CRR073312
Silver flowering 1
53.173
CRR073313
Silver flowering 2
56.771
CRR073314
Silver flowering 3
43.941
CRR073315
Gold flowering 1
21.828
CRR073316
Gold flowering 2
21.426
CRR073317
Gold flowering 3
25.566
CRR073318
Tawny withering 1
32.407
CRR073319
Tawny withering 2
31.837
CRR073320
Tawny withering 3
35.817