Detail information of GWHGAAZE017560


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011020623.10PREDICTED: probable CCR4-associated factor 1 homolog 6 [Populus euphratica]
Swissprottr|Q9SAI2|CAF1F_ARATH4E-166Probable CCR4-associated factor 1 homolog 6
trEMBLtr|F6I3B6|F6I3B6_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB61434.1}
TAIR10AT1G80780.31E-131Polynucleotidyl transferase, ribonuclease H-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene79607897961598-
GWHAAZE00000005mRNA79607897961598-
GWHAAZE00000005exon79607897961598-
GWHAAZE00000005CDS79607897961598-
Transcript Sequence

Network for GWHGAAZE017560

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04857.21CAF1151362.70E-13
PF04857.21CAF11612431.70E-06
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12581CNOT7_8, CAF1, POP2 RNA degradation map03018

Gene Ontology

GO term OntologyName
GO:0003676molecular_functionnucleic acid binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf46.988
SRR3591706second leaf26.302
SRR3591707mature leaf31.555
SRR3591708Shoot apex39.463
SRR3591709Stem52.778
SRR3591710White floral bud82.329
SRR3591711White flower95.970
SRR3591712Green floral bud89.491
SRR3591713Yellow flower119.335
SRP173429 SRR8316895Juvenile bud stage 30.411
SRR8316896Juvenile bud stage 39.846
SRR8316897Juvenile bud stage 20.812
SRR8316894Third green stage 18.763
SRR8316900Third green stage 61.136
SRR8316901Third green stage 60.442
SRR8316898Complete white stage 38.358
SRR8316899Complete white stage 92.273
SRR8316903Complete white stage 51.861
SRR8316902Silver flowering stage39.474
SRR8316904Silver flowering stage44.255
SRR8316905Silver flowering stage20.428
SRR8316906Gold flowering stage 81.281
SRR8316907Gold flowering stage 69.261
SRR8316908Gold flowering stage 86.666
SRP132670SRR6706286Control29.329
SRR6706287Light intensity 50%29.331
SRR6706288Light intensity 20%30.968
CNP0000432CNS0095592Slightly white alabastrum(diploid) 147.999
CNS0095593Slightly white alabastrum(diploid) 253.847
CNS0095594Slightly white alabastrum(diploid) 359.530
CNS0095595Whole white alabastrum(diploid) 254.741
CNS0095596Whole white alabastrum(diploid) 360.900
CNS0095597Whole white alabastrum(diploid) 460.859
CNS0095598Silvery flower (diploied) 158.161
CNS0095599Silvery flower (diploied) 256.346
CNS0095600Silvery flower (diploied) 389.948
CNS0095601Golden flower (diploid) 159.844
CNS0095602Golden flower (diploid) 273.201
CNS0095603Golden flower (diploid) 370.679
CNS0095604Slightly white alabastrum(tetraploid) 157.765
CNS0095605Slightly white alabastrum(tetraploid) 249.279
CNS0095606Slightly white alabastrum(tetraploid) 357.967
CNS0095607Whole white alabastrum(tetraploid) 160.742
CNS0095608Whole white alabastrum(tetraploid) 258.967
CNS0095609Whole white alabastrum(tetraploid) 363.483
CNS0095610Silvery flower (diploied) 174.816
CNS0095611Silvery flower (diploied) 277.621
CNS0095612Silvery flower (diploied) 377.584
CNS0095613Golden flower (tetraploid) 175.231
CNS0095614Golden flower (tetraploid) 270.616
CNS0095615Golden flower (tetraploid) 395.057
CRA001975CRR073297Stem 129.728
CRR073298Stem 229.365
CRR073299Stem 329.384
CRR073300Leaf 137.289
CRR073301Leaf 231.698
CRR073302Leaf 341.620
CRR073303Juvenile bud 139.103
CRR073304Juvenile bud 243.985
CRR073305Juvenile bud 335.529
CRR073306Third green 137.151
CRR073307Third green 242.616
CRR073308Third green 336.738
CRR073309Second white 166.118
CRR073310Second white 256.926
CRR073311Second white 345.090
CRR073312Silver flowering 153.173
CRR073313Silver flowering 256.771
CRR073314Silver flowering 343.941
CRR073315Gold flowering 121.828
CRR073316Gold flowering 221.426
CRR073317Gold flowering 325.566
CRR073318Tawny withering 132.407
CRR073319Tawny withering 231.837
CRR073320Tawny withering 335.817