Gene detail

Detail information of GWHGAAZE017585

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010268475.1	0	PREDICTED: tubby-like protein 8 [Nelumbo nucifera]
Swissprot	tr\|Q9S9M8\|TLP8_ARATH	2E-137	Tubby-like protein 8
trEMBL	tr\|B9GLP7\|B9GLP7_POPTR	0	Uncharacterized protein {ECO:0000313\|EMBL:EEE83964.1}
TAIR10	AT1G16070.1	6E-105	tubby like protein 8

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	8237405	8240526	-
GWHAAZE00000005	mRNA	8237405	8240526	-
GWHAAZE00000005	exon	8237405	8237533	-
GWHAAZE00000005	exon	8238184	8238276	-
GWHAAZE00000005	exon	8238371	8238460	-
GWHAAZE00000005	exon	8238553	8238649	-
GWHAAZE00000005	exon	8238744	8238799	-
GWHAAZE00000005	exon	8239003	8239182	-
GWHAAZE00000005	exon	8239827	8239941	-
GWHAAZE00000005	exon	8240048	8240526	-
GWHAAZE00000005	CDS	8240048	8240526	-
GWHAAZE00000005	CDS	8239827	8239941	-
GWHAAZE00000005	CDS	8239003	8239182	-
GWHAAZE00000005	CDS	8238744	8238799	-
GWHAAZE00000005	CDS	8238553	8238649	-
GWHAAZE00000005	CDS	8238371	8238460	-
GWHAAZE00000005	CDS	8238184	8238276	-
GWHAAZE00000005	CDS	8237405	8237533	-

Transcript Sequence
>GWHTAAZE017605 ATGTCTGGATTCAAGAAATCTTCAATTCCCGGCCAGAGTTCATACAACTCCCTCTATCTCAATCCCCTCACCGAGATCAAACACAACCGGAGCTCCAGCGCCGGAACCACTGACAGTCAATCTCTCGGAGCCCACATGGGTCGGATTACGTTAAGGGTGAACGAGGACAAAGAGAATGCCGAACCCAATAAGATCAAGAACCAAGTCAATGTAGGTAAAGAAAATGAAGTGCCCAGTAATGGTTTATTGTTCCCTCCGGCCAAAGCCAAACATTTTCCAAATGGAAACTCTAACCTTAAAGACAGGGTTTTAAGGCCATCTTCACTTCAACTATGTATGCAAATGAATGAGCCTGATTCCACTTTTGGGTCGAAAATTTGGGATCCAATTGATTCGGATAATTCAAATTCTGTCAATATTTGGGACTATTCGGATTCGGAGGCTGCCCCTGCTTCTTCGTGGTCTACCATTCCCAACAGGTCATTGTTGTGTAGGCCATTGCCTCTGGACATAGGGAGGTGTGCTTGTGTTATTGTGAAAGAAGCATGTCCGGAAGGGCTAAATGGGGACACTCTTTTTGCTCTTTACACCAATGAGGGTCAAGGACGACAGAATCGCAAACTTGCTGTAGCTCATCACAAACGACATAATGGAAGATCTGAGTTTACAGTGGCCCAAAATACAAAAGGATTATTATGTAGCTCGGATGATAGTTTCGTTGGAACTGTTACCGCCAACCTCATGGGTTCAAAGTACCAGATATGGAATGATCAGGGCAGCCGTCTCAGTTCCACAACCAAACTCTCTAAACTTCTGCTTGCTGTTGTAACATTCACGCCAACTATAGCAACATGGACAGGAAGTTACAGAAGCATGAAGGCGTGGATACCCAAGCATCAATCCATGCAGCTTAAGACTACTACCCAGATACAACATATAAATGGGCTAACAAAGGATTGGGAAGAGAAAATGGACAAAGTACATCAGCTATTCTCAAAGGTTCCACATTACAATAATGCTTCAAAGCAATACGAGTTAGATTTCAGAGAGAGGGGAAGATCAGGACTTAAAATCCAGAGCTCCGTCAAGAATTTTCAGTTAACATTGGAGGAAAAGAAAAAAGAGGAGCAAAAACTTAAGAGTTTGAATTCTTTGGTCTGCAGATATCCATTGACTGGTTATCAAGCTTTCTCTATATGTTTGGCTGCTATGGATTCAAAGCTTTGCTGCACAGTGTAA

Network for GWHGAAZE017585

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01167.19	Tub	166	406	5.60E-30

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	TUB

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.906
	SRR3591706	second leaf	3.495
	SRR3591707	mature leaf	0.357
	SRR3591708	Shoot apex	21.163
	SRR3591709	Stem	3.314
	SRR3591710	White floral bud	0.580
	SRR3591711	White flower	0.474
	SRR3591712	Green floral bud	0.634
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	1.934
	SRR8316896	Juvenile bud stage	1.164
	SRR8316897	Juvenile bud stage	0.520
	SRR8316894	Third green stage	0.758
	SRR8316900	Third green stage	0.711
	SRR8316901	Third green stage	0.144
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.184
	SRR8316903	Complete white stage	0.304
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.357
	SRR6706287	Light intensity 50%	0.525
	SRR6706288	Light intensity 20%	0.549
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.632
	CNS0095593	Slightly white alabastrum(diploid) 2	0.797
	CNS0095594	Slightly white alabastrum(diploid) 3	0.652
	CNS0095595	Whole white alabastrum(diploid) 2	0.575
	CNS0095596	Whole white alabastrum(diploid) 3	0.043
	CNS0095597	Whole white alabastrum(diploid) 4	0.228
	CNS0095598	Silvery flower (diploied) 1	0.885
	CNS0095599	Silvery flower (diploied) 2	0.837
	CNS0095600	Silvery flower (diploied) 3	0.323
	CNS0095601	Golden flower (diploid) 1	0.324
	CNS0095602	Golden flower (diploid) 2	0.286
	CNS0095603	Golden flower (diploid) 3	0.282
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.497
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.601
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.710
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.791
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.211
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.135
	CNS0095610	Silvery flower (diploied) 1	0.000
	CNS0095611	Silvery flower (diploied) 2	0.186
	CNS0095612	Silvery flower (diploied) 3	0.101
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.022
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	2.400
	CRR073298	Stem 2	1.108
	CRR073299	Stem 3	1.697
	CRR073300	Leaf 1	0.181
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.047
	CRR073304	Juvenile bud 2	0.006
	CRR073305	Juvenile bud 3	0.439
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.030
	CRR073309	Second white 1	0.001
	CRR073310	Second white 2	0.004
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.243
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	2.505
	CRR073319	Tawny withering 2	1.363
	CRR073320	Tawny withering 3	4.392