Detail information of GWHGAAZE017678


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002511167.10Phospholipase C 4 precursor, putative [Ricinus communis]
Swissprottr|Q8H965|NPC6_ARATH0Non-specific phospholipase C6 (Precursor)
trEMBLtr|B9RAE2|B9RAE2_RICCO0Phospholipase C 4, putative {ECO:0000313|EMBL:EEF51769.1}
TAIR10AT3G48610.10non-specific phospholipase C6

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene95298259531941+
GWHAAZE00000005mRNA95298259531941+
GWHAAZE00000005exon95298259530929+
GWHAAZE00000005exon95313269531502+
GWHAAZE00000005exon95316439531941+
GWHAAZE00000005CDS95298259530929+
GWHAAZE00000005CDS95313269531502+
GWHAAZE00000005CDS95316439531941+
Transcript Sequence

Network for GWHGAAZE017678

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0162map02024 Quorum sensing
map00565 Ether lipid metabolism
map04919 Thyroid hormone signaling pathway
map00562 Inositol phosphate metabolism
GO:0016788 hydrolase activity, acting on ester bonds GOslim:molecular_function
map00564 Glycerophospholipid metabolism


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04185.15Phosphoesterase403973.70E-106
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01114plc Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Inositol phosphate metabolismmap00562
Glycerophospholipid metabolismmap00564
Ether lipid metabolismmap00565
Quorum sensingmap02024
Thyroid hormone signaling pathwaymap04919

Gene Ontology

GO term OntologyName
GO:0003824molecular_functioncatalytic activity
GO:0016788molecular_functionhydrolase activity, acting on ester bonds

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf70.244
SRR3591706second leaf24.091
SRR3591707mature leaf15.241
SRR3591708Shoot apex19.619
SRR3591709Stem25.396
SRR3591710White floral bud31.629
SRR3591711White flower11.405
SRR3591712Green floral bud65.333
SRR3591713Yellow flower4.819
SRP173429 SRR8316895Juvenile bud stage 5.710
SRR8316896Juvenile bud stage 7.474
SRR8316897Juvenile bud stage 3.931
SRR8316894Third green stage 7.506
SRR8316900Third green stage 33.528
SRR8316901Third green stage 27.607
SRR8316898Complete white stage 8.520
SRR8316899Complete white stage 32.392
SRR8316903Complete white stage 15.900
SRR8316902Silver flowering stage0.819
SRR8316904Silver flowering stage3.374
SRR8316905Silver flowering stage0.802
SRR8316906Gold flowering stage 0.531
SRR8316907Gold flowering stage 0.669
SRR8316908Gold flowering stage 0.936
SRP132670SRR6706286Control25.812
SRR6706287Light intensity 50%26.354
SRR6706288Light intensity 20%29.243
CNP0000432CNS0095592Slightly white alabastrum(diploid) 112.668
CNS0095593Slightly white alabastrum(diploid) 220.290
CNS0095594Slightly white alabastrum(diploid) 36.725
CNS0095595Whole white alabastrum(diploid) 220.488
CNS0095596Whole white alabastrum(diploid) 319.816
CNS0095597Whole white alabastrum(diploid) 418.107
CNS0095598Silvery flower (diploied) 113.106
CNS0095599Silvery flower (diploied) 210.027
CNS0095600Silvery flower (diploied) 35.855
CNS0095601Golden flower (diploid) 18.910
CNS0095602Golden flower (diploid) 27.533
CNS0095603Golden flower (diploid) 37.273
CNS0095604Slightly white alabastrum(tetraploid) 121.684
CNS0095605Slightly white alabastrum(tetraploid) 215.489
CNS0095606Slightly white alabastrum(tetraploid) 352.162
CNS0095607Whole white alabastrum(tetraploid) 115.141
CNS0095608Whole white alabastrum(tetraploid) 211.296
CNS0095609Whole white alabastrum(tetraploid) 328.099
CNS0095610Silvery flower (diploied) 15.950
CNS0095611Silvery flower (diploied) 25.638
CNS0095612Silvery flower (diploied) 34.177
CNS0095613Golden flower (tetraploid) 10.162
CNS0095614Golden flower (tetraploid) 22.883
CNS0095615Golden flower (tetraploid) 31.414
CRA001975CRR073297Stem 123.662
CRR073298Stem 223.937
CRR073299Stem 327.406
CRR073300Leaf 156.637
CRR073301Leaf 245.870
CRR073302Leaf 337.484
CRR073303Juvenile bud 150.429
CRR073304Juvenile bud 234.866
CRR073305Juvenile bud 357.296
CRR073306Third green 18.050
CRR073307Third green 28.919
CRR073308Third green 312.746
CRR073309Second white 10.623
CRR073310Second white 21.076
CRR073311Second white 30.169
CRR073312Silver flowering 10.085
CRR073313Silver flowering 20.034
CRR073314Silver flowering 30.101
CRR073315Gold flowering 114.217
CRR073316Gold flowering 215.324
CRR073317Gold flowering 315.664
CRR073318Tawny withering 137.724
CRR073319Tawny withering 222.588
CRR073320Tawny withering 336.636