Gene detail

Detail information of GWHGAAZE017693

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002279452.1	PREDICTED: malate synthase, glyoxysomal [Vitis vinifera]
Swissprot	tr\|P17815\|MASY_RICCO	Malate synthase, glyoxysomal
trEMBL	tr\|A0A061FZB9\|A0A061FZB9_THECC	Malate synthase {ECO:0000256\|RuleBase:RU000555}
TAIR10	AT5G03860.2	malate synthase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	9707163	9711185	-
GWHAAZE00000005	mRNA	9707163	9711185	-
GWHAAZE00000005	exon	9710790	9711185	-
GWHAAZE00000005	exon	9708789	9709114	-
GWHAAZE00000005	exon	9708363	9708693	-
GWHAAZE00000005	exon	9708192	9708281	-
GWHAAZE00000005	exon	9707163	9707819	-
GWHAAZE00000005	CDS	9710790	9711185	-
GWHAAZE00000005	CDS	9708789	9709114	-
GWHAAZE00000005	CDS	9708363	9708693	-
GWHAAZE00000005	CDS	9708192	9708281	-
GWHAAZE00000005	CDS	9707163	9707819	-

Transcript Sequence
>GWHTAAZE017713 ATGGCTGGCCTTGGGGCTTCTTATGGTTACTCGGCGCCTATGGCAAGAAAGATGGGCATTGGTTATGATGTTCCCGAGGGAGTAGACATTAGGGGACGGTACGATGAAGAGTTTGCTAAGATTCTTAGTAAGGATGCTTTGCAATTTGTTGCTGAATTGCAAAGGGAGTTTAGGAACCACATTAAGTACGCGATGGAGTGTAGAAAGGAGGCGAAGATGAGGTATAATAATGGTGGTTTGCCAGGGTTTGATCCCGCAACTAAGTGTGTGAGGGAAAGTGAGTGGGTGTGTGGGGGGGTGCCACCAGCGGTTGCTGATCGGAGGGTGGAGATTACTGGTCCGGTGGAACGGAAGATGATCATTAATGCTCTCAACTCTGGTGCCAAAGTTTTCATGGCTGATTTTGAAGATGCACTGTCACCAAGTTGGGAGAATCTTATGAGGGGGCAAGTTAACTTGAAGGATGCTGTCGATGGGTCTATAACTTACAGTGACAAGGCTAGGAACAAAGTTTACAGGCTCAATGATCAGACCTCTAAGCTTTTTGTCCGCCCAAGAGGCTGGCACCTACCAGAAGCCCACATCTTCGTTGATGGACAACCTGCAACTGGTTGCCTTGTTGACTTTGGCCTTTACTTCTACCACAACTATGCAGCATTTCGCCGGAACCAAGGTGCAGGTTTTGGACCTTTTTTCTATCTCCCAAAAATGGAACATTCAAGGGAAGCTAGGATATGGAATAACGTGTTTGAGAGAGCAGAGAGAATGGCCGGAATAGAAAAGGGAAGCATTAGAGCTACTGTGCTGATTGAAACCCTACCAGCCGTATTTCAAATGGATGAAATACTCTACGAGCTAAGGGATCACTCTGTTGGTTTGAATTGCGGTAGATGGGATTACATTTTTAGCTATGTAAAGACCTTCCAGGCTCACCCTGACCGCCTACTACCTGACAGGGTTCTAGTCAGCATGAACCAGCACTTCATGAGAAGTTACTCTGATCTCCTCATCAGGACCTGCCACAGGCGTGGTGTGCATGCCATGGGAGGCATGACCCTAGGAACATGGTCGATCCGATTTATGGGATTCAGACCGGCCAGTACCGCTTCAGTTTCCACATGGTTGGTCCGGTCGGACTGCCAGGCAGCTCAAATTCCAATAAGGGATGATCCAGTTGCGAATGAGGCAGCACTGGAATTAGTGAGGAAGGATAAGCTGAGAGAGGTTAAGGCAGGGCACGATGGCACGTGGGCGGCTCATCCTGGGTTGATTCCAGCCATCATGGAAGTCTTCACCAACAACATGGGCAATTTCCGTAATTTAATCCAAACCATGAAGAGAGAAGACGCAGCAAACATAACCGAAGAAGATCTATTAGAGATCCCCAAAGGGGTCCGAACCATGGAAGGTCTTCGTCTGAACACCCGTGTTGGGATCCAGTACTTAGCAGCGTGGCTCACTGGAACCGGTTCGGTTCCTCTTTACAACCTCATGGAGGATGCTGCTACAGCGGAGATAAGCAGAGTTCAGAACTGGCAATGGTTGAAATATGGGGTGGAATTGGATGGTGATGGCCTCGGGGTGAAGGTGAACTTGGACCTGTTTGGGAGAGTGGTTGAAGAAGAGATGGCTAGGATTGAGAGAGAGGTTGGAAAGGAAAAGTTCAAGAAGGGAATGTATAAGGAGGCTTGTAAGATGTTCACTCGACAGTGCATTACTAAAACACTGGATGATTTCGTGACCTTGGATGCCTATAATCATATTGTCATCCATTATCCCAAGGGATCATCTAAGCTCTAA

Network for GWHGAAZE017693

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01274.23	Malate_synthase	29	352	9.40E-139
PF01274.23	Malate_synthase	382	589	5.10E-70

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01638	aceB, glcB	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Pyruvate metabolism	map00620
		Glyoxylate and dicarboxylate metabolism	map00630

Gene Ontology

GO term	Ontology	Name
GO:0006097	biological_process	glyoxylate cycle
GO:0004474	molecular_function	malate synthase activity
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.236
	SRR3591707	mature leaf	0.074
	SRR3591708	Shoot apex	4.872
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.232
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.331
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.402
	SRR8316896	Juvenile bud stage	0.819
	SRR8316897	Juvenile bud stage	0.511
	SRR8316894	Third green stage	0.270
	SRR8316900	Third green stage	0.823
	SRR8316901	Third green stage	1.184
	SRR8316898	Complete white stage	0.045
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.031
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.793
	SRR6706287	Light intensity 50%	0.536
	SRR6706288	Light intensity 20%	0.469
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.249
	CNS0095593	Slightly white alabastrum(diploid) 2	0.442
	CNS0095594	Slightly white alabastrum(diploid) 3	0.502
	CNS0095595	Whole white alabastrum(diploid) 2	2.167
	CNS0095596	Whole white alabastrum(diploid) 3	1.869
	CNS0095597	Whole white alabastrum(diploid) 4	0.624
	CNS0095598	Silvery flower (diploied) 1	0.078
	CNS0095599	Silvery flower (diploied) 2	0.071
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.099
	CNS0095603	Golden flower (diploid) 3	0.082
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.849
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.703
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.177
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.113
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.137
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.866
	CNS0095610	Silvery flower (diploied) 1	0.000
	CNS0095611	Silvery flower (diploied) 2	0.093
	CNS0095612	Silvery flower (diploied) 3	0.215
	CNS0095613	Golden flower (tetraploid) 1	0.023
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.545
	CRR073298	Stem 2	0.241
	CRR073299	Stem 3	0.463
	CRR073300	Leaf 1	0.401
	CRR073301	Leaf 2	0.208
	CRR073302	Leaf 3	0.219
	CRR073303	Juvenile bud 1	0.234
	CRR073304	Juvenile bud 2	0.046
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.035
	CRR073307	Third green 2	0.107
	CRR073308	Third green 3	0.029
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.038
	CRR073315	Gold flowering 1	0.841
	CRR073316	Gold flowering 2	0.993
	CRR073317	Gold flowering 3	0.438
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.001
	CRR073320	Tawny withering 3	0.000