Gene detail

Detail information of GWHGAAZE017866

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CBI15301.3	1.6864E-82	unnamed protein product [Vitis vinifera]
Swissprot	tr\|O49608\|MYB32_ARATH	2E-32	Transcription factor MYB32
trEMBL	tr\|D7SIJ0\|D7SIJ0_VITVI	6E-83	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI15301.3}
TAIR10	AT3G28470.1	2E-32	Duplicated homeodomain-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	11848098	11849407	+
GWHAAZE00000005	mRNA	11848098	11849407	+
GWHAAZE00000005	exon	11848098	11848200	+
GWHAAZE00000005	exon	11848388	11848502	+
GWHAAZE00000005	exon	11848801	11849407	+
GWHAAZE00000005	CDS	11848098	11848200	+
GWHAAZE00000005	CDS	11848388	11848502	+
GWHAAZE00000005	CDS	11848801	11849407	+

Transcript Sequence
>GWHTAAZE017886 ATGGCAAGGTCTCCCTGTTGCAACAAAATCAATGCAAGAAAGGAAATTTGGGCTGAAGAGGAGGACGGAATTTGTAATTCTGCAGCTATTTCAAAGAAAGCAGGAAAAAGTTCCAGACCTGGGTGGAGAAACTACATGAAGCACGATTTTAGCGAAGAAAGCTTCACCCCTCAAGAAGACGAGTTGATTATTAGGCTTCACGCTACAATCGGTAGCAGGTGGCCTATAATAGCCCAACAACTACCTGGTAGAACAGACAGTGATGTGAAAAACCATTGGAACACAAAGCTCAGGAAGAAGCTCTCTGAAATGGGGATTGATCCGGTTACCCACAAGCCCTTCTCCAAAATCCTCGCAGATTATGGAAGCATCAGTAGTCTCTCAAGAACCAGTACTCGAGCCGGCTCACTAAACAGAGAGTTAAAGAATATTATCGCATTTGAATCGCAAGTAGAGAATTTTTCTAACTACAAAACTCATTTATCAGTTCCCAAAACGGAACCATCCAAAGAGAGCTTTTCGATCCACCCCGGTTATACAACTGAAAATGAAGAACCACCACTCCATAGCTTTAGTTGGCGTGATTTTCTACTGGAAGATGCATTTTTGCCCGAAAATGCGTGCGCAAAAGAAAAAGAAATTTCCAAAGGAGTTGAAGAAACTTGTGAAGGAGTTGAAGAGACTAATGAATGTAATAATATCCCAATATATAACAGTCTCAGTGCTTCAACATCTTCGGATTCTTCATTTGTGGAAGCTATGATAGATGAAGAAAAAGACATGTTCTTGGAGTTCCCTGGACTATTGGAGGAGCCATTCTTTTGA

Network for GWHGAAZE017866

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.32	Myb_DNA-binding	53	95	7.20E-12

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB-related

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.228
	SRR3591706	second leaf	7.510
	SRR3591707	mature leaf	6.739
	SRR3591708	Shoot apex	0.862
	SRR3591709	Stem	0.144
	SRR3591710	White floral bud	1.238
	SRR3591711	White flower	0.092
	SRR3591712	Green floral bud	4.524
	SRR3591713	Yellow flower	0.143
SRP173429	SRR8316895	Juvenile bud stage	1.948
	SRR8316896	Juvenile bud stage	4.461
	SRR8316897	Juvenile bud stage	1.349
	SRR8316894	Third green stage	1.228
	SRR8316900	Third green stage	4.515
	SRR8316901	Third green stage	3.048
	SRR8316898	Complete white stage	0.206
	SRR8316899	Complete white stage	8.812
	SRR8316903	Complete white stage	0.339
	SRR8316902	Silver flowering stage	0.089
	SRR8316904	Silver flowering stage	0.083
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.168
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.358
SRP132670	SRR6706286	Control	1.269
	SRR6706287	Light intensity 50%	1.333
	SRR6706288	Light intensity 20%	1.345
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.199
	CNS0095593	Slightly white alabastrum(diploid) 2	0.708
	CNS0095594	Slightly white alabastrum(diploid) 3	2.446
	CNS0095595	Whole white alabastrum(diploid) 2	0.577
	CNS0095596	Whole white alabastrum(diploid) 3	0.137
	CNS0095597	Whole white alabastrum(diploid) 4	0.596
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.055
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.214
	CNS0095603	Golden flower (diploid) 3	0.068
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.449
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.636
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.756
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.183
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.515
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.876
	CNS0095610	Silvery flower (diploied) 1	0.146
	CNS0095611	Silvery flower (diploied) 2	0.000
	CNS0095612	Silvery flower (diploied) 3	0.358
	CNS0095613	Golden flower (tetraploid) 1	0.050
	CNS0095614	Golden flower (tetraploid) 2	0.005
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	2.746
	CRR073298	Stem 2	2.324
	CRR073299	Stem 3	2.052
	CRR073300	Leaf 1	1.044
	CRR073301	Leaf 2	1.255
	CRR073302	Leaf 3	1.898
	CRR073303	Juvenile bud 1	1.564
	CRR073304	Juvenile bud 2	0.300
	CRR073305	Juvenile bud 3	2.846
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.048
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.568
	CRR073315	Gold flowering 1	2.770
	CRR073316	Gold flowering 2	1.380
	CRR073317	Gold flowering 3	0.580
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.005
	CRR073320	Tawny withering 3	0.000