Gene detail

Detail information of GWHGAAZE017870

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006354810.1	0	PREDICTED: serine/threonine-protein kinase AtPK2/AtPK19-like [Solanum tuberosum]
Swissprot	tr\|Q39030\|KPK2_ARATH	1E-175	Serine/threonine-protein kinase AtPK2/AtPK19
trEMBL	tr\|M1D6I8\|M1D6I8_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400083117}
TAIR10	AT3G08720.2	7E-133	serine/threonine protein kinase 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	11886497	11891339	+
GWHAAZE00000005	mRNA	11886497	11891339	+
GWHAAZE00000005	exon	11886497	11887003	+
GWHAAZE00000005	exon	11888993	11889075	+
GWHAAZE00000005	exon	11889162	11889282	+
GWHAAZE00000005	exon	11889404	11889577	+
GWHAAZE00000005	exon	11890604	11890711	+
GWHAAZE00000005	exon	11890811	11891339	+
GWHAAZE00000005	CDS	11886497	11887003	+
GWHAAZE00000005	CDS	11888993	11889075	+
GWHAAZE00000005	CDS	11889162	11889282	+
GWHAAZE00000005	CDS	11889404	11889577	+
GWHAAZE00000005	CDS	11890604	11890711	+
GWHAAZE00000005	CDS	11890811	11891107	+
GWHAAZE00000005	three_prime_UTR	11891108	11891339	+

Transcript Sequence
>GWHTAAZE017890 TTCGGCCCTCAAACTTCCTCCAATTTGTTATCATCCTCACCCTCCTCTTCCTTTTTTCTCGGTGACCCCCCAATTATTCACAATCGTTCTCACTCCTTTGTCGGCCCTTCCCCTCGATTGGTCCTATCCAAATCCCTCTCTTTTCACCCAAAAATCGATTCCAATTCCGAAGATGAAATTGAAGAAGAAGTTGTTAACCCTAGCGCTCCTACAGAGGAGGAGGAGGATAGAGGGGCGGAGAGCAAGATTGGGCCTGGGGATTTTGAGATTTTGAGGGTTATTGGTAAAGGTGCTTTTGGCAAGGTTTTTCAAGTGAGGAAGAAAGATGGGAATGGTGAGATTAATGGAAGAGAGGCCGAGTGTATTGTTGATGGGATACTTGCTATGAAAGTTATGAGGAAGGATACTATTATAAAGAATAATCATGTTGATTATATGAAGGCTGAGAGGGATATACTCACCAAAGTTGTGCATCCCTTCATTGTACCACTCCGTTACTCTTTTCAGACGAAGTCTAAGCTGTATTTGGTCCTGGATTTTATAAATGGAGGGCATCTCTTCTTTCATCTATACCGACAAGGGATCTTCAGTGAGGATCAGGCAAGGGTTTATACTGCTGAGATAGTATCTGCTGTTTCACATCTTCACAAGAGCGGGATCGTGCATCGAGATCTTAAACCTGAAAACATTCTCATGGATGCTGATGGGCATGTTATGCTAACTGACTTTGGACTGGCAAAGGAAATTAATGAATCAAGCAGATCAAATTCGATGTGTGGGACCACAGAATACATGGCTCCAGAAATCCTACTGTCTAAAGGCCACAACAAAGATGCAGATTGGTGGAGTGTTGGAATACTCTTGTATGAAATGCTAACTGGGAAGCCACCATTCACACATGCAAATCGAAAGAAGCTTCAGGAGAAGATAATCAATGAAAAGGTGAAGCTTCTACCACGCCTGAGTGGCGAAGCTCACTCTTTGCTCAAGGGATTGTTGCAAAAGGACCCAGCAAAAAGATTAGGCAGCGGTCCCAGGGGTGGGGACGAGATTAAAAATCATAAGTGGTTGTCGTCAATCAACTGGAAGAAACTGGAGGCCAGAGAATTGGAGCCGAAGTTTAAGCCAGATGTAAGCAGCAAAGTCTGCACTGCTAATTTTGACAGGTGTTGGACGGCAATGCCTGCTGATGACTCGCCAGCTCCTACACCGACAGCGGGTGAGCATTTCCACGGGTACACTTATGTAGCACCCAATCCTTGGCTTTCCTCTGAACAAATTGAGGAGTGAAGTGATTCAAGCAAGGAAATTTGTCGATTTAATCTTGTAAGTTGATTATCATTTATTTTTTCTTCAGAAAATAGATTATAAGTTAATGTGACTGAACTCATCTATCGTGTACGCGGTATTATTGCCTTTCTTATTTTTAGCTGTGTGTTTCCATTTTCCTGAAATAATTATTTGTATCTGTCTTTAAGTACTCTCGTTCGCAAGCCCATTCAACCAGGAAGGCAGGAACCTT

Network for GWHGAAZE017870

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	88	357	5.60E-71
PF00433.25	Pkinase_C	378	415	0.00027

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	AGC-Pl

KEGG pathway

KO	Enzyme	pathway	mapID
K04688	RPS6KB	ErbB signaling pathway	map04012
		TGF-beta signaling pathway	map04350
		Apelin signaling pathway	map04371
		HIF-1 signaling pathway	map04066
		PI3K-Akt signaling pathway	map04151
		AMPK signaling pathway	map04152
		mTOR signaling pathway	map04150
		Autophagy - animal	map04140
		Fc gamma R-mediated phagocytosis	map04666
		Insulin signaling pathway	map04910
		Axon regeneration	map04361
		Longevity regulating pathway	map04211
		Longevity regulating pathway - worm	map04212
		Longevity regulating pathway - multiple species	map04213
		Thermogenesis	map04714

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004674	molecular_function	protein serine/threonine kinase activity
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	47.502
	SRR3591706	second leaf	21.801
	SRR3591707	mature leaf	27.377
	SRR3591708	Shoot apex	41.013
	SRR3591709	Stem	37.495
	SRR3591710	White floral bud	52.667
	SRR3591711	White flower	30.838
	SRR3591712	Green floral bud	53.054
	SRR3591713	Yellow flower	28.378
SRP173429	SRR8316895	Juvenile bud stage	25.859
	SRR8316896	Juvenile bud stage	33.913
	SRR8316897	Juvenile bud stage	19.209
	SRR8316894	Third green stage	16.130
	SRR8316900	Third green stage	47.651
	SRR8316901	Third green stage	49.503
	SRR8316898	Complete white stage	22.341
	SRR8316899	Complete white stage	66.575
	SRR8316903	Complete white stage	38.596
	SRR8316902	Silver flowering stage	19.756
	SRR8316904	Silver flowering stage	25.822
	SRR8316905	Silver flowering stage	14.227
	SRR8316906	Gold flowering stage	41.454
	SRR8316907	Gold flowering stage	38.776
	SRR8316908	Gold flowering stage	41.956
SRP132670	SRR6706286	Control	35.789
	SRR6706287	Light intensity 50%	40.862
	SRR6706288	Light intensity 20%	43.426
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	40.761
	CNS0095593	Slightly white alabastrum(diploid) 2	40.766
	CNS0095594	Slightly white alabastrum(diploid) 3	37.271
	CNS0095595	Whole white alabastrum(diploid) 2	36.269
	CNS0095596	Whole white alabastrum(diploid) 3	40.256
	CNS0095597	Whole white alabastrum(diploid) 4	38.548
	CNS0095598	Silvery flower (diploied) 1	33.458
	CNS0095599	Silvery flower (diploied) 2	24.354
	CNS0095600	Silvery flower (diploied) 3	34.722
	CNS0095601	Golden flower (diploid) 1	25.644
	CNS0095602	Golden flower (diploid) 2	31.241
	CNS0095603	Golden flower (diploid) 3	25.650
	CNS0095604	Slightly white alabastrum(tetraploid) 1	44.936
	CNS0095605	Slightly white alabastrum(tetraploid) 2	48.410
	CNS0095606	Slightly white alabastrum(tetraploid) 3	63.822
	CNS0095607	Whole white alabastrum(tetraploid) 1	39.506
	CNS0095608	Whole white alabastrum(tetraploid) 2	36.139
	CNS0095609	Whole white alabastrum(tetraploid) 3	49.398
	CNS0095610	Silvery flower (diploied) 1	32.407
	CNS0095611	Silvery flower (diploied) 2	35.599
	CNS0095612	Silvery flower (diploied) 3	35.603
	CNS0095613	Golden flower (tetraploid) 1	30.508
	CNS0095614	Golden flower (tetraploid) 2	34.196
	CNS0095615	Golden flower (tetraploid) 3	42.847
CRA001975	CRR073297	Stem 1	31.716
	CRR073298	Stem 2	29.691
	CRR073299	Stem 3	20.985
	CRR073300	Leaf 1	35.136
	CRR073301	Leaf 2	34.388
	CRR073302	Leaf 3	27.966
	CRR073303	Juvenile bud 1	30.501
	CRR073304	Juvenile bud 2	24.924
	CRR073305	Juvenile bud 3	37.021
	CRR073306	Third green 1	19.989
	CRR073307	Third green 2	18.278
	CRR073308	Third green 3	14.142
	CRR073309	Second white 1	10.523
	CRR073310	Second white 2	15.439
	CRR073311	Second white 3	14.554
	CRR073312	Silver flowering 1	12.290
	CRR073313	Silver flowering 2	10.103
	CRR073314	Silver flowering 3	8.353
	CRR073315	Gold flowering 1	13.994
	CRR073316	Gold flowering 2	23.908
	CRR073317	Gold flowering 3	11.759
	CRR073318	Tawny withering 1	21.268
	CRR073319	Tawny withering 2	24.261
	CRR073320	Tawny withering 3	19.825