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Detail information of GWHGAAZE017910
Functional Annotation
Database
Orthologs
E value
Annotation
Nr
XP_002282635.1
1.7254E-150
PREDICTED: putative exosome complex component rrp40 [Vitis vinifera]
trEMBL
tr|D7SHR2|D7SHR2_VITVI
6E-151
Putative uncharacterized protein {ECO:0000313|EMBL:CBI15022.3}
TAIR10
AT4G32175.1
3E-101
PNAS-3 related
Location And Transcript Sequence
(JBrowse)
Scaffold
Type
Start
End
Strand
GWHAAZE00000005
gene
12401778
12407720
+
GWHAAZE00000005
mRNA
12401778
12407720
+
GWHAAZE00000005
exon
12401778
12402003
+
GWHAAZE00000005
exon
12403618
12403675
+
GWHAAZE00000005
exon
12403763
12403837
+
GWHAAZE00000005
exon
12404685
12404771
+
GWHAAZE00000005
exon
12405564
12405620
+
GWHAAZE00000005
exon
12406142
12406234
+
GWHAAZE00000005
exon
12407128
12407200
+
GWHAAZE00000005
exon
12407310
12407476
+
GWHAAZE00000005
exon
12407601
12407720
+
GWHAAZE00000005
five_prime_UTR
12401778
12402003
+
GWHAAZE00000005
five_prime_UTR
12403618
12403636
+
GWHAAZE00000005
CDS
12403637
12403675
+
GWHAAZE00000005
CDS
12403763
12403837
+
GWHAAZE00000005
CDS
12404685
12404771
+
GWHAAZE00000005
CDS
12405564
12405620
+
GWHAAZE00000005
CDS
12406142
12406234
+
GWHAAZE00000005
CDS
12407128
12407200
+
GWHAAZE00000005
CDS
12407310
12407476
+
GWHAAZE00000005
CDS
12407601
12407720
+
Transcript Sequence
>GWHTAAZE017930 AAAAAAGAAAAAAAATTTAAGAACACCGAGTATTGTATTGGGACCAACCCTAGGGTTTTGGATCCTCTTAAGTGGGCCAAACAAATTAATCCCGCGCGTTCTCAGTTGGCCCTTTGCTGATTATTTCTTACGTTTTTTTTTAATATATCTTTGTTTTGGCTCTCAACCGAGGAGAAGAGAGAATTTGCGAGAGAGAGAGAGGGGCTGAAGAATAGACGAAGAAAAGCTAAAAGGTGGAAGTTAAGATGTCGGGCTTGTCAACAAGCTTTGTTGATCAATTAGTTGTTCCAGGGGATGTGGTATTGGATCTCTCAGCTATGGCCAACCAAACCATAAAGCTTGGAGGCGGTCTTCGTCAGGACTGCGATGCTATAACTGTCATAAAGGCTGGGAAGTTGAGGTTTTCGAAGCCAAACAAGTATTGGGTGGAAAGCTCGCAGAAAAGATATGTACCATGTATGGGGGATACTGTTCTGGGAATTGTGGTAGACTCTAAAGCAGATAACTTTCTTGTGGACATAAAGGGACCTACATTGGCGTTCCTGCCCGTTCTCGCGTTTGAGGGAGGAACTAGAAGAAACATACCAAAGTTTGAGACAGGTACTTTGCTCTATGCTCGCGTTGTCAAGGCGAACACTGGCATGAACCCGGAACTGTCGTGCATGGATGTCACCGGGAAAGCAGCAGAATTTGGCCAACTTAAAGATGGTTACATGTTTGAGTCTTCAACTGGCCTATCTCGAATGCTGCTGAGTTCCCCAGCATGTCCAGTTCTTGAATCTCTTGGGAAGAAGCTCTCCTTTGAGATAGCAGTTGGTTTGAATGGCCGTGTTTGGGTGAACGCTGAATCTCCATCGACAGTTATTCTTGTGACGAATGCAATAATGAATTCGGAGTCTTTGAGTGGGGTACAACAAAAGATTATGGTGGAGAAACTGCTTAAGAGAGTTCAGTAA
Network for GWHGAAZE017910
Network category
Network
Top300 PCC genelist
Coexpression Positive
Network
Top300 PCC genelist
Coexpression Negative
Network
Top300 PCC genelist
Functional Module
Module ID
Function Annotation
Protein Structure
Pfam accession
Pfam name
Alignment start
Alignment end
E-value
PF15985.6
KH_6
155
203
1.70E-16
Protein Sequence
>GWHPAAZE017920 MSGLSTSFVDQLVVPGDVVLDLSAMANQTIKLGGGLRQDCDAITVIKAGKLRFSKPNKYWVESSQKRYVPCMGDTVLGIVVDSKADNFLVDIKGPTLAFLPVLAFEGGTRRNIPKFETGTLLYARVVKANTGMNPELSCMDVTGKAAEFGQLKDGYMFESSTGLSRMLLSSPACPVLESLGKKLSFEIAVGLNGRVWVNAESPSTVILVTNAIMNSESLSGVQQKIMVEKLLKRVQ
Gene family
Gene family
subfamily
--
--
KEGG pathway
KO
Enzyme
pathway
mapID
K03681
RRP40, EXOSC3
RNA degradation
map03018
Gene Ontology
GO term
Ontology
Name
GO:0003723
molecular_function
RNA binding
Expression pattern
Expression pattern detail
SRP
Sample
Description
TPM
SRP075780
SRR3591705
youngest leaf
27.765
SRR3591706
second leaf
18.598
SRR3591707
mature leaf
19.909
SRR3591708
Shoot apex
26.896
SRR3591709
Stem
27.623
SRR3591710
White floral bud
27.091
SRR3591711
White flower
40.756
SRR3591712
Green floral bud
29.186
SRR3591713
Yellow flower
36.017
SRP173429
SRR8316895
Juvenile bud stage
21.408
SRR8316896
Juvenile bud stage
32.823
SRR8316897
Juvenile bud stage
10.203
SRR8316894
Third green stage
9.035
SRR8316900
Third green stage
28.792
SRR8316901
Third green stage
25.857
SRR8316898
Complete white stage
12.524
SRR8316899
Complete white stage
30.662
SRR8316903
Complete white stage
15.949
SRR8316902
Silver flowering stage
18.835
SRR8316904
Silver flowering stage
16.968
SRR8316905
Silver flowering stage
11.075
SRR8316906
Gold flowering stage
32.996
SRR8316907
Gold flowering stage
40.102
SRR8316908
Gold flowering stage
47.816
SRP132670
SRR6706286
Control
31.976
SRR6706287
Light intensity 50%
31.245
SRR6706288
Light intensity 20%
33.693
CNP0000432
CNS0095592
Slightly white alabastrum(diploid) 1
29.928
CNS0095593
Slightly white alabastrum(diploid) 2
25.578
CNS0095594
Slightly white alabastrum(diploid) 3
31.946
CNS0095595
Whole white alabastrum(diploid) 2
27.555
CNS0095596
Whole white alabastrum(diploid) 3
24.350
CNS0095597
Whole white alabastrum(diploid) 4
25.942
CNS0095598
Silvery flower (diploied) 1
26.159
CNS0095599
Silvery flower (diploied) 2
19.139
CNS0095600
Silvery flower (diploied) 3
21.559
CNS0095601
Golden flower (diploid) 1
26.333
CNS0095602
Golden flower (diploid) 2
20.081
CNS0095603
Golden flower (diploid) 3
23.476
CNS0095604
Slightly white alabastrum(tetraploid) 1
26.534
CNS0095605
Slightly white alabastrum(tetraploid) 2
26.337
CNS0095606
Slightly white alabastrum(tetraploid) 3
29.812
CNS0095607
Whole white alabastrum(tetraploid) 1
20.494
CNS0095608
Whole white alabastrum(tetraploid) 2
20.472
CNS0095609
Whole white alabastrum(tetraploid) 3
28.403
CNS0095610
Silvery flower (diploied) 1
39.091
CNS0095611
Silvery flower (diploied) 2
33.136
CNS0095612
Silvery flower (diploied) 3
33.251
CNS0095613
Golden flower (tetraploid) 1
33.575
CNS0095614
Golden flower (tetraploid) 2
34.136
CNS0095615
Golden flower (tetraploid) 3
27.198
CRA001975
CRR073297
Stem 1
29.719
CRR073298
Stem 2
30.144
CRR073299
Stem 3
28.895
CRR073300
Leaf 1
28.694
CRR073301
Leaf 2
35.698
CRR073302
Leaf 3
27.696
CRR073303
Juvenile bud 1
31.310
CRR073304
Juvenile bud 2
22.997
CRR073305
Juvenile bud 3
19.220
CRR073306
Third green 1
20.012
CRR073307
Third green 2
19.518
CRR073308
Third green 3
16.941
CRR073309
Second white 1
22.370
CRR073310
Second white 2
25.408
CRR073311
Second white 3
24.190
CRR073312
Silver flowering 1
21.282
CRR073313
Silver flowering 2
20.643
CRR073314
Silver flowering 3
20.084
CRR073315
Gold flowering 1
16.495
CRR073316
Gold flowering 2
23.202
CRR073317
Gold flowering 3
8.974
CRR073318
Tawny withering 1
28.791
CRR073319
Tawny withering 2
28.432
CRR073320
Tawny withering 3
29.583