Gene detail

Detail information of GWHGAAZE018113

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004237248.2	6.6917E-146	PREDICTED: probable lipid phosphate phosphatase 4 [Solanum lycopersicum]
Swissprot	tr\|Q0WNG6\|LPP4_ARATH	1E-125	Probable lipid phosphate phosphatase 4
trEMBL	tr\|K4BQY5\|K4BQY5_SOLLC	3E-146	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc04g025400.2.1}
TAIR10	AT1G15080.1	2E-96	lipid phosphate phosphatase 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	15337599	15340359	+
GWHAAZE00000005	mRNA	15337599	15340359	+
GWHAAZE00000005	exon	15337599	15337814	+
GWHAAZE00000005	exon	15338047	15338134	+
GWHAAZE00000005	exon	15338220	15338329	+
GWHAAZE00000005	exon	15338568	15338658	+
GWHAAZE00000005	exon	15339059	15339247	+
GWHAAZE00000005	exon	15339371	15339430	+
GWHAAZE00000005	exon	15340181	15340359	+
GWHAAZE00000005	CDS	15337599	15337814	+
GWHAAZE00000005	CDS	15338047	15338134	+
GWHAAZE00000005	CDS	15338220	15338329	+
GWHAAZE00000005	CDS	15338568	15338658	+
GWHAAZE00000005	CDS	15339059	15339247	+
GWHAAZE00000005	CDS	15339371	15339430	+
GWHAAZE00000005	CDS	15340181	15340359	+

Transcript Sequence
>GWHTAAZE018135 ATGCCAGAGATTCAGCTGGGAGCTCACTCCATACAATACCATGGCACAAAGTTGGCAAGAATCCATATGCAAGACTGGCTAATTCTTGTGCTGCTAGGGGTTATCGACGGGCTTTTAAATTATGTAGAACCTTTTCATCGCTATATAGGGAAGGATATGACGACGGATCTCAAATTCCCATTTAAAGAGGACACAGTACCTATGTGGGCTGTCCCAATCTTTTCAATATTGCTGCCTTGCGTCATATTTCTCATTTATTATATTTACAGAAAGGATATTTGTGATTTGCACGATGCTATATTGGGTCTTCTATACTCTAGCCTGGTCACCGGAGTTATCACAGATTCAATTAAAGATGCTGTTGGTCGACCACGGCCAAATTTCTATTTGAGGTGTTTCCCTGATGGACAAGCGAAATTTAGTTCAAATGGAGATGTTGCGTGTGACGGACTCAAGAAAGTGATAAAGGAAGGTTACAAAAGCTTCCCAAGCGGCCACACTTCTTGGTCCTTTGCGGGACTTGGTTTCCTTGCTTGGTACTTGTGTGGGAAAATAAAAGTGTTTGATCGTAGGGGGCATGCTGCCAAACTCTGTATTGTTGTGCTTCCATATCTTTCCGCTGCATTAATTGGAGTTTCTCGTGTGGATGACTATTGGCATCATTGGACAGATGTATTCACTGGAGCGCTCATAGGAACAGTAATTTCTGCGGTTTGCTACTTGCTGTTCTTTCCATTCCCAAATGAAGTAAATGGGTGGGCACCTCACGCATATTTTAGAATGCTGGAAGAACTTGAGGGTCAGGCTACACCAGCAAGGATGGAATCTGCTTATGTGCAATGTGCCAGAGATAATGTTACAGATTCCTGTAGTTCAGGAGGTGTAACCCCTGCCCTTGAAGCTATGGAAAATGGCCTTAGAAGCAAAACTTAA

Network for GWHGAAZE018113

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01569.22	PAP2	100	244	1.70E-29

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K18693	DPP1, DPPL, PLPP4_5	Biosynthesis of secondary metabolites	map01110
		Glycerolipid metabolism	map00561
		Glycerophospholipid metabolism	map00564

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.566
	SRR3591706	second leaf	0.154
	SRR3591707	mature leaf	0.186
	SRR3591708	Shoot apex	0.260
	SRR3591709	Stem	1.689
	SRR3591710	White floral bud	194.632
	SRR3591711	White flower	9.265
	SRR3591712	Green floral bud	127.550
	SRR3591713	Yellow flower	6.892
SRP173429	SRR8316895	Juvenile bud stage	9.904
	SRR8316896	Juvenile bud stage	35.454
	SRR8316897	Juvenile bud stage	18.087
	SRR8316894	Third green stage	12.048
	SRR8316900	Third green stage	53.429
	SRR8316901	Third green stage	58.538
	SRR8316898	Complete white stage	0.078
	SRR8316899	Complete white stage	0.897
	SRR8316903	Complete white stage	0.185
	SRR8316902	Silver flowering stage	1.371
	SRR8316904	Silver flowering stage	3.202
	SRR8316905	Silver flowering stage	0.566
	SRR8316906	Gold flowering stage	0.087
	SRR8316907	Gold flowering stage	0.579
	SRR8316908	Gold flowering stage	0.202
SRP132670	SRR6706286	Control	35.679
	SRR6706287	Light intensity 50%	39.062
	SRR6706288	Light intensity 20%	33.949
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	81.303
	CNS0095593	Slightly white alabastrum(diploid) 2	60.031
	CNS0095594	Slightly white alabastrum(diploid) 3	96.633
	CNS0095595	Whole white alabastrum(diploid) 2	160.266
	CNS0095596	Whole white alabastrum(diploid) 3	187.196
	CNS0095597	Whole white alabastrum(diploid) 4	220.184
	CNS0095598	Silvery flower (diploied) 1	9.383
	CNS0095599	Silvery flower (diploied) 2	22.923
	CNS0095600	Silvery flower (diploied) 3	5.403
	CNS0095601	Golden flower (diploid) 1	9.335
	CNS0095602	Golden flower (diploid) 2	5.643
	CNS0095603	Golden flower (diploid) 3	4.705
	CNS0095604	Slightly white alabastrum(tetraploid) 1	153.660
	CNS0095605	Slightly white alabastrum(tetraploid) 2	177.708
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.415
	CNS0095607	Whole white alabastrum(tetraploid) 1	289.193
	CNS0095608	Whole white alabastrum(tetraploid) 2	349.447
	CNS0095609	Whole white alabastrum(tetraploid) 3	128.817
	CNS0095610	Silvery flower (diploied) 1	3.361
	CNS0095611	Silvery flower (diploied) 2	18.228
	CNS0095612	Silvery flower (diploied) 3	39.365
	CNS0095613	Golden flower (tetraploid) 1	6.620
	CNS0095614	Golden flower (tetraploid) 2	1.368
	CNS0095615	Golden flower (tetraploid) 3	25.381
CRA001975	CRR073297	Stem 1	14.367
	CRR073298	Stem 2	12.688
	CRR073299	Stem 3	9.434
	CRR073300	Leaf 1	51.127
	CRR073301	Leaf 2	29.212
	CRR073302	Leaf 3	13.383
	CRR073303	Juvenile bud 1	38.252
	CRR073304	Juvenile bud 2	33.637
	CRR073305	Juvenile bud 3	3.313
	CRR073306	Third green 1	18.654
	CRR073307	Third green 2	20.671
	CRR073308	Third green 3	19.785
	CRR073309	Second white 1	0.310
	CRR073310	Second white 2	4.538
	CRR073311	Second white 3	4.946
	CRR073312	Silver flowering 1	22.439
	CRR073313	Silver flowering 2	20.308
	CRR073314	Silver flowering 3	11.290
	CRR073315	Gold flowering 1	13.906
	CRR073316	Gold flowering 2	7.218
	CRR073317	Gold flowering 3	3.190
	CRR073318	Tawny withering 1	25.305
	CRR073319	Tawny withering 2	21.497
	CRR073320	Tawny withering 3	20.705