Gene detail

Detail information of GWHGAAZE018133

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010663666.1	0	PREDICTED: serine/threonine-protein kinase EDR1 isoform X1 [Vitis vinifera]
Swissprot	tr\|Q9FPR3\|EDR1_ARATH	9E-107	Serine/threonine-protein kinase EDR1
trEMBL	tr\|A0A061FW24\|A0A061FW24_THECC	0	Tyrosine kinase family protein isoform 1 {ECO:0000313\|EMBL:EOY21273.1}
TAIR10	AT1G73660.1	0	protein tyrosine kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	15571628	15583029	+
GWHAAZE00000005	mRNA	15571628	15583029	+
GWHAAZE00000005	exon	15571628	15572128	+
GWHAAZE00000005	exon	15572774	15573211	+
GWHAAZE00000005	exon	15573988	15574091	+
GWHAAZE00000005	exon	15575154	15576241	+
GWHAAZE00000005	exon	15576349	15576389	+
GWHAAZE00000005	exon	15577980	15578048	+
GWHAAZE00000005	exon	15578708	15578808	+
GWHAAZE00000005	exon	15578983	15579052	+
GWHAAZE00000005	exon	15580229	15580327	+
GWHAAZE00000005	exon	15580422	15580490	+
GWHAAZE00000005	exon	15580928	15581077	+
GWHAAZE00000005	exon	15582665	15582714	+
GWHAAZE00000005	exon	15582849	15583029	+
GWHAAZE00000005	CDS	15571628	15572128	+
GWHAAZE00000005	CDS	15572774	15573211	+
GWHAAZE00000005	CDS	15573988	15574091	+
GWHAAZE00000005	CDS	15575154	15576241	+
GWHAAZE00000005	CDS	15576349	15576389	+
GWHAAZE00000005	CDS	15577980	15578048	+
GWHAAZE00000005	CDS	15578708	15578808	+
GWHAAZE00000005	CDS	15578983	15579052	+
GWHAAZE00000005	CDS	15580229	15580327	+
GWHAAZE00000005	CDS	15580422	15580490	+
GWHAAZE00000005	CDS	15580928	15581077	+
GWHAAZE00000005	CDS	15582665	15582714	+
GWHAAZE00000005	CDS	15582849	15583029	+

Transcript Sequence
>GWHTAAZE018155 ATGAAGAACCTTCTCAAGAAACTTCATATTGTGTCCAACAATCAATCTGAAGATTTAGAAGGGTCTACTTCATCAAAGGGCAATAGATTGAGTGATGTCTCATCATCATCACCCGATAAATTTTCTCACTCTCAGTCCCATCACAGTTCTGACCATAATAAACCCTTTTCAGCACTTTCGGGATGGTTGAATTCGGTTACTAATAGGCATAGCCCTAGTCCACCATCATCTTCAAATGTGAGAAGAGGAGATAAAATTGAACCCTCTGATTCCGTGAGTAGCAGTGCTCTGGATGCTGCATTAGATGCAGTGATGCGAGATTCGGAGTCAAGTAACTCAAGGGATCCAGATATAGAGGAGGAGTATCAAATACAATTGGCTTTGGAGTTGAGTGCAAGGGAGGATCCTGAAGCAGTTCAGATTGAAGCCGTTAAGCAGATTAGTTTGGGTTCTTGTAATCCAGAGAATACTCCTGCAGAAGTAGTTGCATTTCGATATTGGAATTACAATGTTCTTAGCTACAATGACAAGATTCTCGACGGTTTTTATGATCTATATGGAATCTTAATGGATTCCACGTCATCAAAGATGCCATCCCTTGTTGATCTCCAAGGAACACCAATATCAGATAATATTACATGGGAAGCCGTTCTTGTCAACAAGGCTTCTGACGCTAAGCTTTTACGACTCGAACAGAAGGCCCTGCAGATGTCAGTCAATTATATGCCAGAGTCTCAAATTTTTGTTGGTAGAGATTTGGTAAGGAAGCTAGCTGTTTTAGTTTCTAATCATATGGGGGGTCCAGTTGGGGATCCGGACAACATGTTGATAGCATGGAGAAGTCTTAGTCATAATCTGAAAGCAACTCTCAGGAGCATGGTTTTGCCTCTCGGCTCTTTAAAAGTTGGATTGGCCCGTCATCGTGCACTGTTATTTAAGGTTTTAGCGGATAGTGTTGGCCTCCCTTGTTGTTTAGTCAAAGGACAACAATATACTGGTTCTGTTGACGTGGCAATGAACTTCGTAAAGATTGATGATGGAAGGGAATACATTGTTGATCTAATGGCAGATCCTGGCACACTTATCCCAGCTGATGCAGCAGGATCATCACATACGGAATATGAAGAATCTTTCTCAACAAGTCCTTTTCCTAGGGATATAGACTCCTCTCAAGTAGCTTCTTCGAGTAGCGGAGTTGCTACTTCATTTCAAGAACATTCAGAGTTTGAGATACTACCAAAGAGACCCTTCTCTAAATTTTTTGATGCAGCAGTAAGAGAGTCCAACGAAAGAGCTGAACAAATGCCTTCTGCAGATTTAGTAGTAAATATTAAAGCTGAAGAAGGGTCCAAGGAATCATCAGGCAGCAATCCCCGCAGTTCAAACATGCATGCACGATCTCCTTCATGGACTGAAGGCGTTAGCTCTCCAGCGGCACACAAAATGAAGGTAAAAGATGTCTCAAGATACATGATTGATGCTGCCAAAGAAAATCCACAGTTAGCTCAGAAACTTCATGATGTTTTACTCGAAAGTGGTGTTGTTGCTCCTCCTAATTTGTTCACTGAAATCTATAAAGAGCAGTCGAATATAGAAACGGCAGAGGCCAAGTCCATGACTGAATACACCCAAAAGACAAAGGGTCATCAAGCTGATCTTAGTCGAGCTCGGTTTTTGCCTCCTCTGCCTTACCGTGGTTTACATTCTAAAGTAATAACTCATGGTCAACCGGAATATCATCAAGATTTAGAGGAAGTAAATGTTAGAAATGTACCTGTTGCAGCAGCGGCAGCTGTGGTTGCATCTTCGATGGTAGTAGCTGTAACAAGGACAACCAACACTACGGGACTTGAACTTCCTGTTGCAGCTGCTGCCACTGCTACTGCGGCAGCTTTGGTAGCAACAAGTGCAGCTGTGGGCAAACAGTACGAGAATTTGGAGACTTATGCTCATTCACCAAGTGGTAGTGGTAACCGGGAGAATTATGCTCTTGGGGGGAACCTGGATGGTGAGAGAGTATCAGATAGATCGACAGGTAATGAAAGCACAAAGTCCGATGTGACACTTGACGATGTGGCGGACTGCGAGATTCCGTGGGAGGATATCACCTTGGGCGAGCGGATTGGACTTGGATCGTATGGGGAGGTCTATCGTGGAGACTGGCATGGAACTGAAGTTGCTGTAAAGAAGTTTCTAGACCAAGATTTAACTGGTGAATCCCTTGAGGAGTTCAAGAGTGAGGTCCGGATCATGAAAAGAGTCAGGCATCCCAACGTTGTTCTCTTCATGGGGGCTATCACCCGTGCTCCAAATCTTTCAATTGTTACAGAATTTCTTCCTAGGAATTTTGGGATTTCATGCCCCACGAGTGAGTTGCAGCTGTTAGGCAAGTCATACCATATGCAAGTCTGGGCTCGTGGGATGAATTATTTGCACAAATGCTCACCTGTAATAGTTCATCGAGATTTAAAGTCCCCAAACCTTCTTGTTGATAAGAATTGGGTTGTGAAGGTATGCGATTTTGGGTTATCTAGAATGAAGCTTAGCACATTTCTTTCTTCAAGGTCAACTGCAGGGACGGGAAAACTTGTAGTTGGGTTGATGTCTTGGTGGCCTAGTTTCTTTTGCCTTGTCTTTTTGAATCTGATGTTCGGTCCTTTTGAATCTAATGCTCAAAACATGAAAATTGACATTCCTGTTATTGGGGCTTCATCTGTGAATATATCCCAAGCAGAGTGGATGGCTCCTGAGGTGTTGAGGAACGAGCCTTCAGATGAAAAGTGTGATGTGTATAGCTTTGGTGTAATATTATGGGAGCTATGTACGATGCAGCAGCCATGGGGCGGAATGAACCCAATGCAAGTTGTTGGTGCCGTAGGATTTCAGCACCGTCGCCTTGATATTCCAGATGACATTGATCCTGTCGTTGGTGATATCATCCGCCAATGCTGGCAAACGTGA

Network for GWHGAAZE018133

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14381.7	EDR1	159	362	2.80E-75
PF07714.18	PK_Tyr_Ser-Thr	702	847	4.10E-29
PF07714.18	PK_Tyr_Ser-Thr	910	985	4.90E-16

Protein Sequence

>GWHPAAZE018144
MKNLLKKLHIVSNNQSEDLEGSTSSKGNRLSDVSSSSPDKFSHSQSHHSSDHNKPFSALSGWLNSVTNRHSPSPPSSSNVRRGDKIEPSDSVSSSALDAALDAVMRDSESSNSRDPDIEEEYQIQLALELSAREDPEAVQIEAVKQISLGSCNPENTPAEVVAFRYWNYNVLSYNDKILDGFYDLYGILMDSTSSKMPSLVDLQGTPISDNITWEAVLVNKASDAKLLRLEQKALQMSVNYMPESQIFVGRDLVRKLAVLVSNHMGGPVGDPDNMLIAWRSLSHNLKATLRSMVLPLGSLKVGLARHRALLFKVLADSVGLPCCLVKGQQYTGSVDVAMNFVKIDDGREYIVDLMADPGTLIPADAAGSSHTEYEESFSTSPFPRDIDSSQVASSSSGVATSFQEHSEFEILPKRPFSKFFDAAVRESNERAEQMPSADLVVNIKAEEGSKESSGSNPRSSNMHARSPSWTEGVSSPAAHKMKVKDVSRYMIDAAKENPQLAQKLHDVLLESGVVAPPNLFTEIYKEQSNIETAEAKSMTEYTQKTKGHQADLSRARFLPPLPYRGLHSKVITHGQPEYHQDLEEVNVRNVPVAAAAAVVASSMVVAVTRTTNTTGLELPVAAAATATAAALVATSAAVGKQYENLETYAHSPSGSGNRENYALGGNLDGERVSDRSTGNESTKSDVTLDDVADCEIPWEDITLGERIGLGSYGEVYRGDWHGTEVAVKKFLDQDLTGESLEEFKSEVRIMKRVRHPNVVLFMGAITRAPNLSIVTEFLPRNFGISCPTSELQLLGKSYHMQVWARGMNYLHKCSPVIVHRDLKSPNLLVDKNWVVKVCDFGLSRMKLSTFLSSRSTAGTGKLVVGLMSWWPSFFCLVFLNLMFGPFESNAQNMKIDIPVIGASSVNISQAEWMAPEVLRNEPSDEKCDVYSFGVILWELCTMQQPWGGMNPMQVVGAVGFQHRRLDIPDDIDPVVGDIIRQCWQT

Gene family

Gene family	subfamily
Protein Kinases Family	TKL_CTR1-DRK-2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	7.687
	SRR3591706	second leaf	5.869
	SRR3591707	mature leaf	6.383
	SRR3591708	Shoot apex	8.753
	SRR3591709	Stem	9.605
	SRR3591710	White floral bud	8.089
	SRR3591711	White flower	10.615
	SRR3591712	Green floral bud	7.139
	SRR3591713	Yellow flower	9.929
SRP173429	SRR8316895	Juvenile bud stage	4.356
	SRR8316896	Juvenile bud stage	6.634
	SRR8316897	Juvenile bud stage	2.879
	SRR8316894	Third green stage	3.302
	SRR8316900	Third green stage	7.757
	SRR8316901	Third green stage	8.096
	SRR8316898	Complete white stage	3.207
	SRR8316899	Complete white stage	11.115
	SRR8316903	Complete white stage	7.141
	SRR8316902	Silver flowering stage	3.371
	SRR8316904	Silver flowering stage	6.220
	SRR8316905	Silver flowering stage	3.406
	SRR8316906	Gold flowering stage	11.144
	SRR8316907	Gold flowering stage	7.819
	SRR8316908	Gold flowering stage	9.467
SRP132670	SRR6706286	Control	8.064
	SRR6706287	Light intensity 50%	8.258
	SRR6706288	Light intensity 20%	8.066
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.923
	CNS0095593	Slightly white alabastrum(diploid) 2	5.590
	CNS0095594	Slightly white alabastrum(diploid) 3	4.344
	CNS0095595	Whole white alabastrum(diploid) 2	3.965
	CNS0095596	Whole white alabastrum(diploid) 3	3.646
	CNS0095597	Whole white alabastrum(diploid) 4	3.879
	CNS0095598	Silvery flower (diploied) 1	4.918
	CNS0095599	Silvery flower (diploied) 2	5.055
	CNS0095600	Silvery flower (diploied) 3	9.676
	CNS0095601	Golden flower (diploid) 1	4.485
	CNS0095602	Golden flower (diploid) 2	8.610
	CNS0095603	Golden flower (diploid) 3	8.471
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.456
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.385
	CNS0095606	Slightly white alabastrum(tetraploid) 3	9.976
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.756
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.272
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.647
	CNS0095610	Silvery flower (diploied) 1	10.625
	CNS0095611	Silvery flower (diploied) 2	11.587
	CNS0095612	Silvery flower (diploied) 3	14.261
	CNS0095613	Golden flower (tetraploid) 1	6.710
	CNS0095614	Golden flower (tetraploid) 2	7.821
	CNS0095615	Golden flower (tetraploid) 3	13.446
CRA001975	CRR073297	Stem 1	8.961
	CRR073298	Stem 2	7.397
	CRR073299	Stem 3	5.761
	CRR073300	Leaf 1	8.839
	CRR073301	Leaf 2	7.767
	CRR073302	Leaf 3	5.938
	CRR073303	Juvenile bud 1	6.753
	CRR073304	Juvenile bud 2	4.797
	CRR073305	Juvenile bud 3	9.722
	CRR073306	Third green 1	6.091
	CRR073307	Third green 2	4.153
	CRR073308	Third green 3	5.793
	CRR073309	Second white 1	5.839
	CRR073310	Second white 2	6.209
	CRR073311	Second white 3	6.528
	CRR073312	Silver flowering 1	6.582
	CRR073313	Silver flowering 2	4.672
	CRR073314	Silver flowering 3	4.121
	CRR073315	Gold flowering 1	2.672
	CRR073316	Gold flowering 2	5.390
	CRR073317	Gold flowering 3	2.634
	CRR073318	Tawny withering 1	7.850
	CRR073319	Tawny withering 2	7.320
	CRR073320	Tawny withering 3	9.032