Gene detail

Detail information of GWHGAAZE018179

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	P32289.1GLNA_VIGAC	0	RecName: Full=Glutamine synthetase nodule isozyme; Short=GS; AltName: Full=Glutamate--ammonia ligase [Vigna aconitifolia]
Swissprot	tr\|P32289\|GLNA_VIGAC	0	Glutamine synthetase nodule isozyme
trEMBL	tr\|V4NLL0\|V4NLL0_EUTSA	0	Glutamine synthetase {ECO:0000256\|RuleBase:RU004356}
TAIR10	AT1G66200.1	5E-177	glutamine synthase clone F11

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	16187788	16191254	+
GWHAAZE00000005	mRNA	16187788	16191254	+
GWHAAZE00000005	exon	16187788	16187904	+
GWHAAZE00000005	exon	16188627	16188730	+
GWHAAZE00000005	exon	16188823	16188871	+
GWHAAZE00000005	exon	16188977	16189083	+
GWHAAZE00000005	exon	16189253	16189340	+
GWHAAZE00000005	exon	16189574	16189702	+
GWHAAZE00000005	exon	16189974	16190048	+
GWHAAZE00000005	exon	16190163	16190216	+
GWHAAZE00000005	exon	16190396	16190433	+
GWHAAZE00000005	exon	16190639	16190798	+
GWHAAZE00000005	exon	16191102	16191254	+
GWHAAZE00000005	CDS	16187788	16187904	+
GWHAAZE00000005	CDS	16188627	16188730	+
GWHAAZE00000005	CDS	16188823	16188871	+
GWHAAZE00000005	CDS	16188977	16189083	+
GWHAAZE00000005	CDS	16189253	16189340	+
GWHAAZE00000005	CDS	16189574	16189702	+
GWHAAZE00000005	CDS	16189974	16190048	+
GWHAAZE00000005	CDS	16190163	16190216	+
GWHAAZE00000005	CDS	16190396	16190433	+
GWHAAZE00000005	CDS	16190639	16190798	+
GWHAAZE00000005	CDS	16191102	16191254	+

Transcript Sequence
>GWHTAAZE018201 ATGGCGAGGCTTTCAGACCTTATCAACTTGAATCTCTCCGACTCCTCTGACAAGATCATTGCTGAATACATATGGTTAGATCTCTCTCTCTCTCTGTTTCCTTTTCTTTCTTTTGCAACTCTCCCTGGACCAGTTTCTGATCCTTCCAAGCTTCCAAAGTGGAATTACGATGGCTCTAGCACCGGCCAAGCCCCCGGTGAAGACAGCGAAGTCATCATATATCCTCAGGCAATATTCAAGGATCCATTCAGGAAAGGCAACAATATTCTTGTGATGTGTGATGCTTACACTCCAGCTGGAGAGCCCATCCCCACAAACAAGAGGCATAATGCTGCCAAGATTTTCAGCCATCCTGATGTCGTTGCTGAGGAGCCTTGGTATGGAATCGAGCAGGAGTATACCCTTTTGAAGAAAGAAGTGAACTGGCCCTTGGGCTGGCCTGTGGGAGGTTTTCCTGGACCTCAGGGACCATACTATTGTGGTATTGGTGCTGACAAGGCTTTTGGCCGTGACATTGTTGACTCGCATTACAAAGCTTGTTTGTATGCAGGCATCAATATTAGTGGCATCAATGGAGAAGTGATGCCCGGTCAGTGGGAATTCCAAGTTGGCCCTGCCGTGGGCATCTCTGCCGGGGATGAGCTATGGGTTGCACGATACATTCTAGAGAGGATAACAGAGATTGCTGGATGTGTGGTTTCTTTTGACCCAAAGCCTATTCCGGGTGACTGGAATGGAGCTGGTGCACATACAAACTACAGTACCAAGTCCATGAGGAAGGATGGAGGGTTTGAAGTCATAAAGAAGGCCATCGAAAAGCTCGGGTTGAAACACAAGGAGCACATTGCTGCCTATGGTGAAGGCAACGAGCGCCGTCTTACTGGGAAACACGAAACAGCTGACATCAACACCTTCTTATGGGGAGTGGCGAATCGTGGAGCGTCAATTAGAGTAGGGAGAGAGACGGAGAAAGACGGGAAAGGTTATTTTGAGGACAGGAGGCCAGCATCAAACATGGATCCATATGTCGTCACTTCCATGATTGCTGAGACTACCCTTCTTTGGAAGAAGTAA

Network for GWHGAAZE018179

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03951.20	Gln-synt_N	52	98	2.10E-09
PF00120.25	Gln-synt_C	128	348	4.90E-14

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01915	glnA, GLUL	Metabolic pathways	map01100
		Microbial metabolism in diverse environments	map01120
		Biosynthesis of amino acids	map01230
		Glyoxylate and dicarboxylate metabolism	map00630
		Nitrogen metabolism	map00910
		Alanine, aspartate and glutamate metabolism	map00250
		Arginine biosynthesis	map00220
		Two-component system	map02020
		Necroptosis	map04217
		Glutamatergic synapse	map04724
		GABAergic synapse	map04727

Gene Ontology

GO term	Ontology	Name
GO:0006807	biological_process	nitrogen compound metabolic process
GO:0006542	biological_process	glutamine biosynthetic process
GO:0003824	molecular_function	catalytic activity
GO:0004356	molecular_function	glutamate-ammonia ligase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	674.257
	SRR3591706	second leaf	217.107
	SRR3591707	mature leaf	119.763
	SRR3591708	Shoot apex	361.574
	SRR3591709	Stem	1131.788
	SRR3591710	White floral bud	624.276
	SRR3591711	White flower	364.148
	SRR3591712	Green floral bud	491.891
	SRR3591713	Yellow flower	595.787
SRP173429	SRR8316895	Juvenile bud stage	232.934
	SRR8316896	Juvenile bud stage	366.971
	SRR8316897	Juvenile bud stage	146.555
	SRR8316894	Third green stage	146.405
	SRR8316900	Third green stage	552.158
	SRR8316901	Third green stage	533.222
	SRR8316898	Complete white stage	298.112
	SRR8316899	Complete white stage	686.333
	SRR8316903	Complete white stage	411.441
	SRR8316902	Silver flowering stage	281.891
	SRR8316904	Silver flowering stage	324.447
	SRR8316905	Silver flowering stage	204.255
	SRR8316906	Gold flowering stage	701.010
	SRR8316907	Gold flowering stage	626.393
	SRR8316908	Gold flowering stage	744.414
SRP132670	SRR6706286	Control	552.201
	SRR6706287	Light intensity 50%	557.739
	SRR6706288	Light intensity 20%	584.911
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	334.959
	CNS0095593	Slightly white alabastrum(diploid) 2	378.748
	CNS0095594	Slightly white alabastrum(diploid) 3	343.686
	CNS0095595	Whole white alabastrum(diploid) 2	364.492
	CNS0095596	Whole white alabastrum(diploid) 3	347.902
	CNS0095597	Whole white alabastrum(diploid) 4	333.881
	CNS0095598	Silvery flower (diploied) 1	302.733
	CNS0095599	Silvery flower (diploied) 2	257.066
	CNS0095600	Silvery flower (diploied) 3	477.574
	CNS0095601	Golden flower (diploid) 1	315.441
	CNS0095602	Golden flower (diploid) 2	539.035
	CNS0095603	Golden flower (diploid) 3	533.644
	CNS0095604	Slightly white alabastrum(tetraploid) 1	435.061
	CNS0095605	Slightly white alabastrum(tetraploid) 2	367.499
	CNS0095606	Slightly white alabastrum(tetraploid) 3	703.614
	CNS0095607	Whole white alabastrum(tetraploid) 1	333.217
	CNS0095608	Whole white alabastrum(tetraploid) 2	335.135
	CNS0095609	Whole white alabastrum(tetraploid) 3	567.874
	CNS0095610	Silvery flower (diploied) 1	761.332
	CNS0095611	Silvery flower (diploied) 2	720.362
	CNS0095612	Silvery flower (diploied) 3	694.991
	CNS0095613	Golden flower (tetraploid) 1	885.422
	CNS0095614	Golden flower (tetraploid) 2	991.799
	CNS0095615	Golden flower (tetraploid) 3	562.765
CRA001975	CRR073297	Stem 1	461.752
	CRR073298	Stem 2	453.870
	CRR073299	Stem 3	443.865
	CRR073300	Leaf 1	709.114
	CRR073301	Leaf 2	701.884
	CRR073302	Leaf 3	837.662
	CRR073303	Juvenile bud 1	816.544
	CRR073304	Juvenile bud 2	903.679
	CRR073305	Juvenile bud 3	830.741
	CRR073306	Third green 1	939.530
	CRR073307	Third green 2	757.907
	CRR073308	Third green 3	725.227
	CRR073309	Second white 1	708.885
	CRR073310	Second white 2	495.117
	CRR073311	Second white 3	520.706
	CRR073312	Silver flowering 1	779.148
	CRR073313	Silver flowering 2	870.404
	CRR073314	Silver flowering 3	844.354
	CRR073315	Gold flowering 1	185.127
	CRR073316	Gold flowering 2	206.429
	CRR073317	Gold flowering 3	261.233
	CRR073318	Tawny withering 1	916.784
	CRR073319	Tawny withering 2	802.318
	CRR073320	Tawny withering 3	821.782