Gene detail

Detail information of GWHGAAZE018192

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007050821.1	2.95802E-87	Mitochondrial transcription termination factor family protein [Theobroma cacao]
trEMBL	tr\|A0A061DY70\|A0A061DY70_THECC	1E-87	Mitochondrial transcription termination factor family protein {ECO:0000313\|EMBL:EOX94978.1}
TAIR10	AT5G07900.1	1E-56	Mitochondrial transcription termination factor family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	16412204	16413256	+
GWHAAZE00000005	mRNA	16412204	16413256	+
GWHAAZE00000005	exon	16412204	16413256	+
GWHAAZE00000005	CDS	16412204	16413256	+

Transcript Sequence
>GWHTAAZE018214 ATGATTCTTACTTACCTGCACAAGAAATTGCTCCAAAACTACGCTTACGGAGCTTTAGAATCAACCCAACTGTATACTTTGCATATAAAACCATCTTTCAACATTAAACTCTACTCAAAAAAGGCCCCTTATGAAATCCCAGAGAGAAAACGAAATTACATTTTATCACTCTTCAAAACCTATGGCTTCACAGATACCCAAATCTCTACTCTTCTAATTAAGAGACCTGTGCTACTCTCCTATCACCCACAAAAAACCCTTAAACCAAAATTGGATTTCTTCAAATCAATAGGTGTTTCTCCTAACGACTTTGAGAATATACTCACTGTGGACCCTTTTGTCATTAGCCGCAACCTTGAGAATCAAGTTCTACCTTCGTATAAGTACTTGAAGAGCGTACTTCACACAAATGAAAATGTCATTGCTGCAATCAAACGGTCCACTAGGCTTCTTAAGCAAGACCTGCTAAAATTCTTGGCACCCAACATTGCCCACTTGCGTGAATCTGGGGTCCCAGGCTGTCGAATTCTGATGCTGCTTAGGACCCAACCTAGGGCATTGATTCAAGTTCCTGATAGGTTCATAGAGATTATCAAGGAGATTAAGAGAATGGGTTTTGATCCATCTGAGATTAAATTCACAAATGCAATCTATGGATCAACTGGGTTTAGTAAGTCGACTTGGGAACGGAAGTGTGGAGTTTATAGAAAGTGGGGTTGGTCCGGAGACGAGATTCTTGCAGCTTTTAAGAAGGCACCCGCCGCTTCCATGGCAGCTTCAGAGAAGAAAATAGAGATGGTGATGGATTTTTTGGTAAACAAAATGGGATGGGATGCATCAGATGTCGTGGAATGTCCTTCTGTAGTTTTGCATAGCTTGGAGAATTGGACTATTCCACGGTGTTTGGTTGTTCAGTTTTTGTTATCAAAGGGTTTAATTAAGGATAAATGCCTAAAGATGGTGATTACGTCGAATAAAAAGAGGTTCTTCATCAAGTTTGTGGATCCATATTGTGCTGAATTCCCTGAAGTGCTGAATTTGTACGAACCCTAA

Network for GWHGAAZE018192

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02536.15	mTERF	55	265	2.40E-21
PF02536.15	mTERF	224	329	8.80E-13

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	mTERF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003690	molecular_function	double-stranded DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.800
	SRR3591706	second leaf	3.299
	SRR3591707	mature leaf	3.866
	SRR3591708	Shoot apex	13.333
	SRR3591709	Stem	7.158
	SRR3591710	White floral bud	12.632
	SRR3591711	White flower	9.954
	SRR3591712	Green floral bud	12.805
	SRR3591713	Yellow flower	4.810
SRP173429	SRR8316895	Juvenile bud stage	5.177
	SRR8316896	Juvenile bud stage	4.940
	SRR8316897	Juvenile bud stage	4.326
	SRR8316894	Third green stage	3.132
	SRR8316900	Third green stage	11.089
	SRR8316901	Third green stage	7.953
	SRR8316898	Complete white stage	10.874
	SRR8316899	Complete white stage	22.084
	SRR8316903	Complete white stage	12.988
	SRR8316902	Silver flowering stage	7.132
	SRR8316904	Silver flowering stage	8.607
	SRR8316905	Silver flowering stage	5.589
	SRR8316906	Gold flowering stage	10.790
	SRR8316907	Gold flowering stage	12.052
	SRR8316908	Gold flowering stage	14.190
SRP132670	SRR6706286	Control	7.233
	SRR6706287	Light intensity 50%	8.116
	SRR6706288	Light intensity 20%	8.376
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.341
	CNS0095593	Slightly white alabastrum(diploid) 2	5.477
	CNS0095594	Slightly white alabastrum(diploid) 3	4.919
	CNS0095595	Whole white alabastrum(diploid) 2	5.423
	CNS0095596	Whole white alabastrum(diploid) 3	3.839
	CNS0095597	Whole white alabastrum(diploid) 4	5.089
	CNS0095598	Silvery flower (diploied) 1	10.516
	CNS0095599	Silvery flower (diploied) 2	8.305
	CNS0095600	Silvery flower (diploied) 3	19.033
	CNS0095601	Golden flower (diploid) 1	7.171
	CNS0095602	Golden flower (diploid) 2	16.684
	CNS0095603	Golden flower (diploid) 3	16.882
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.546
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.965
	CNS0095606	Slightly white alabastrum(tetraploid) 3	13.115
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.521
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.702
	CNS0095609	Whole white alabastrum(tetraploid) 3	9.753
	CNS0095610	Silvery flower (diploied) 1	17.853
	CNS0095611	Silvery flower (diploied) 2	22.935
	CNS0095612	Silvery flower (diploied) 3	26.834
	CNS0095613	Golden flower (tetraploid) 1	7.466
	CNS0095614	Golden flower (tetraploid) 2	13.680
	CNS0095615	Golden flower (tetraploid) 3	10.208
CRA001975	CRR073297	Stem 1	5.955
	CRR073298	Stem 2	8.977
	CRR073299	Stem 3	7.333
	CRR073300	Leaf 1	7.917
	CRR073301	Leaf 2	9.314
	CRR073302	Leaf 3	7.251
	CRR073303	Juvenile bud 1	9.588
	CRR073304	Juvenile bud 2	9.699
	CRR073305	Juvenile bud 3	7.414
	CRR073306	Third green 1	6.147
	CRR073307	Third green 2	4.467
	CRR073308	Third green 3	6.246
	CRR073309	Second white 1	3.830
	CRR073310	Second white 2	3.314
	CRR073311	Second white 3	3.355
	CRR073312	Silver flowering 1	1.591
	CRR073313	Silver flowering 2	2.204
	CRR073314	Silver flowering 3	0.750
	CRR073315	Gold flowering 1	6.992
	CRR073316	Gold flowering 2	3.971
	CRR073317	Gold flowering 3	4.823
	CRR073318	Tawny withering 1	5.613
	CRR073319	Tawny withering 2	7.477
	CRR073320	Tawny withering 3	5.170