Gene detail

Detail information of GWHGAAZE018244

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_009794969.1	PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 1 [Nicotiana sylvestris]
Swissprot	tr\|F4JSZ5\|BIG1_ARATH	Brefeldin A-inhibited guanine nucleotide-exchange protein 1
trEMBL	tr\|F6I0P9\|F6I0P9_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB60515.1}
TAIR10	AT4G38200.1	SEC7-like guanine nucleotide exchange family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	17039579	17055505	-
GWHAAZE00000005	mRNA	17039579	17055505	-
GWHAAZE00000005	exon	17039579	17040220	-
GWHAAZE00000005	exon	17040810	17041492	-
GWHAAZE00000005	exon	17041596	17041956	-
GWHAAZE00000005	exon	17042707	17043028	-
GWHAAZE00000005	exon	17043578	17044080	-
GWHAAZE00000005	exon	17044266	17044539	-
GWHAAZE00000005	exon	17044662	17044951	-
GWHAAZE00000005	exon	17046079	17046501	-
GWHAAZE00000005	exon	17046631	17047044	-
GWHAAZE00000005	exon	17047132	17047174	-
GWHAAZE00000005	exon	17049268	17049465	-
GWHAAZE00000005	exon	17050573	17050670	-
GWHAAZE00000005	exon	17051969	17052930	-
GWHAAZE00000005	exon	17055466	17055505	-
GWHAAZE00000005	CDS	17055466	17055505	-
GWHAAZE00000005	CDS	17051969	17052930	-
GWHAAZE00000005	CDS	17050573	17050670	-
GWHAAZE00000005	CDS	17049268	17049465	-
GWHAAZE00000005	CDS	17047132	17047174	-
GWHAAZE00000005	CDS	17046631	17047044	-
GWHAAZE00000005	CDS	17046079	17046501	-
GWHAAZE00000005	CDS	17044662	17044951	-
GWHAAZE00000005	CDS	17044266	17044539	-
GWHAAZE00000005	CDS	17043578	17044080	-
GWHAAZE00000005	CDS	17042707	17043028	-
GWHAAZE00000005	CDS	17041596	17041956	-
GWHAAZE00000005	CDS	17040810	17041492	-
GWHAAZE00000005	CDS	17039594	17040220	-
GWHAAZE00000005	three_prime_UTR	17039579	17039593	-

Transcript Sequence
>GWHTAAZE018266 ATGATGGGAGATTGTTCATTTGTTACAGTTCTTTTTCTTGGCGGGCCTTCTCGCTGCGGCTGGGTTCTAGGGCCATCACTCGACAAGATCATCAAAAACGTTGCCTGGAGAAAACACTCCCAGCTCGTCGCCGCCTCCAAATCCGCCCTAGACAAACTCGATACCCTCTCCGATTCAGCCGATCCCTTCTCCTGCACCCCTCTTTATGGATTCTCTTCCCCCGATGCCGAATTCGTCCTCCAACCCCTCGTTATGGCCCTCGAATCCGGCTCCGTTAAGGTCGTTGAGCCCGCTCTCGATTGCGTCTTTAGGTTGTTCTCCTTCGGCTTGATCCGATGTGAAATCGATCGGCCTGATGGAAATGATAAACCTTCCGTTGTGTACCGTATCATTGAATGCGTATGCAAGTGTGGTGCCCTTGGCGAGGAGGGGATTGAGCTGACTTCGTTGAAAGTATTGCTTTCTGCCGTTAGGTCTTCGTCTGTGTTGATTAGGGGTGATTGTTTGGTTCAGGTTGTTAGGTCTTGTTATAATGTGTATCTTGGGGGCTTGAATGGGACTAATCAGATCTGTGCAAAGTCGGTTCTAGCCCAGATGATGATCATTGTTTTCGCGAGGATGGAGCAGGATAATATGGTGGTTAGCTTTAGGACTGTATCGGTAGCTGAGTTGTTGGAGTTCACGGATAGAAATTTGAACGAAGGGAGTTCGATACTGTTTGTTCAGAACTTTATCAACGAGGTTGTGGAAGCGAATGAAAGAGTTTTCGATACAAAGTCATCTCTGGACTTGCAAAATGGGAAAACCGAGAAAAATGGAGACCCAGTTGATGCGGAGTCCAACAAAGAAGTGGCGAATTCGGATGGTTTCTCCAAGCTTAGGGAGGATGGTTTTATGCTCTTCAAGAATTTGTGCAAATTATCCATGAAGTTCTCTTCGCAGGAGAATGCAGACGATCAAATTCTCTTGCGGGGAAAGATATTGTCTTTAGAGCTGCTAAAGCCTGTTACTCAAGCTACCTATAATTCGGAAGAGGCTTTTCATGAATTCTTTGGAAAGGAAGATCAGGAGGCTCCCACAATTTTTGCTGATATTCTAAAATCGGGTTTGAAAGCTGAAATCGGAATTTTTTTCCCCATGCTCATCCTTCGTGTGCTTGAGAATGTGCTTCAGCCTAGTTTCTTGCAGAAGATGACCATCCTCAATTTACTGGAAAATATGTCTCAGGATTCACAGATTATCATCGACATTTTTGTCAACTATGACTGTGATGTGGAGGCTCCAAATATTTTTGAAAGACATGGGGCTTTCTATTTATTCTCCGTTTTCAGTGCACCAATGTTTTCTAGTTGTCATTTCAGTTTGGCAATGCGTGTAGTCAATTGTATTAAAACCCTTTTAATTCCATCAGATATTTGCAGGACTGTCAATGGCCTTCTGAAAACTGCTCTAGGCCCACCTCCTGGTTCTACTACTACTTTGTCTCCTGCCCACGACCTTACATTTCGTCTTGAATCAGTGAAGTGCTTGGTTAGAATCATTAAGTCAATGGGAGTTTGGATGGACCAACAGCTGAGAATAGGAGAGTTTTCTCTGCCAAACACCTCTGATAATGAGAATATTGTAGACAACCACGCAAGCCTCGGAGGAGATGAAGTCAGTCTTCCCGACCTTGAGCTGCATTCAGAAGCTACTCCTGGAATCTCAGATGCTGCTACTCTCGAGCAACGCCGAACTTATAAATTAGAGCTTCAGAAAGGTGTTTCTCTGTTTAATCGAAAACCTTCTAAGGGCATTGACTTTTTGGTAAGTAGCAAAAAAATCAGTGGTACTCCAGAAGCGGTGGCGTCTTTTTTGAAGAAAGCTTCTGGTCTGAATGAAAGTATGATTGGTGACTATTTGGGTGAAAGAGACGAGTTTCCTTTGAAAGTTATGCATGCATATGTCGATTCCTTTAACTTTGAAAAAATGGACTTTGGCGAGGCAATTAGATTTTTCCTAAGGGGCTTCAGATTACCTGGAGAGGCACAGAAGATTGACCGCATCATGGAAAAATTTGCTGAGCGCTTTTGTAAATGCAATCCTAGTTCATTTTCTAGTGCTGAAACTGCTTATGTCCTTGCTTACTCTGTGATAATGCTCAACACAGATGCCCACAATAGCATGGTAAAAGACAAGATGACAAAGTCTGACTTTATCCGAAATAACCGAGGGATTGATGATGGGAAGGACTTACCTGAAGAGTATTTGGGTGCCCTCTATGATCAAATTGTAAAGAATGAGATTAAGATGAAAGCCGACACTTCTGTACCTCAGAGTAAGCAGGCCAACAGTGTTAATAAACTACTGGGCTTGGATGGTATACTCAATCTAGTTTGGAAGCAGCCAGAAGAAAAACCATTGGGTGCAAATGGACTCCTTATAAAGCACATCCAAGAGCAGTTCAAGGCGAAATCCGGTAAATCAGAGTCTGTTTATTATACTGTTGTAGATGCAGCAATATTAAGGTTTATGATTGAGGTGTGTTGGGGTCCAATGCTAGCTGCGTATAGTGTAACTCTGGATCAGAGTGATGACAAGTCTGCTACTTCCCAATGTTTATTCGGTTTCCGTCATGCTGTTCATGTTACAGCAGTGATGGGTATGCAGACCCAGAGAGATGCTTTTGTTACTACAGTGGCCAAGTTTACTAACCTCCACTGTGCTGCAGATATGAAGCAAAAAAATGTTGACGCAGTGAAGGCAATGATATCTATTGCTATTGAAGATGGAAATTATCTTCAGGAAGCTTGGGAACATATATTAACATGCCTTTCCCGATTTGAACATCTGCAACTGTTGGGAGAGGGGGCTCCATCTGATGCATCCTATTTCTCTGCATCAAACACTGAAACTGATGAAAAAGCACAGAAAGCGACAGGGTTTACAAACCTAAAGAAGAAAGGAAGTCTCCAGAATCCAGCAGTGATGGCTGTTGTGCGAGGGGGTTCATATGACAGTCCCCATCGTGGAGTTAACGCCTCGGGGCTGGTTACTCCTGAACAAATTAGTAACTTTATTTCAAATTTGAATCTGCTCGATCAGATTGGGAACTTTGAGTTGAATCACATCTTTGCACATAGCCAAAGGTTAAATAGTGAGGCAATTGTGGCTTTTGTGAAAGCCCTTTGCAAGGTTTCCATGTCAGAATTGCAGTCCCCAACGGATCCTCGTGTATTCAGCCTCACAAAACTAGTTGAAGTTGCGCATTACAATATGAACCGCATCAGATTAGTGTGGTCTCGCATATGGAGTGTTCTCTCGGATTTCTTCGTGTCAGTTGGTTTGTCAGAAAATCTCTCAGTTGCCATATTTGTCATGGATTCATTGAGGCAGCTCTCTATGAAATTCCTAGAGCGAGAGGAGCTTGCAAATTACAATTTTCAGAATGAATTTCTGAGGCCGTTTGTGATTGTCATGCAGAGAAGCAACTCTGCTGAAATCAGGGAACTAATAGTTCGATGTATTTCACAGATGGTCCTTAGCCGTGTCAGTAATGTAAAATCTGGCTGGAAGAGTGTTTTCATGGTTTTTACAGCTGCTGCAGCTGATGAACGGAAGAACATAGTCTTGCTAGCCTTTGAGACTATGGAAAAAATAGTAAGAGAATATTTTCCTTATATTACTGAGACAGAGACGGCGACGTTTACCGATTGTGTTAGATGCCTCATCACCTTCACAAACAGTCGATTTAACAGTGATGTTAGTTTCAACGCCATTGCTTTTCTTCGGTTCTGTGCTGTCAAACTGGCTGAAGGGGGACTTGTTTGCACCGAAAAAAGTAAGGATGGTGACTCTTCCACTCCAATACCAAATGACGATGCATCAGATGGACAAACTGGTACAGATAAAGATGACAACGTAACCTTTTGGATGCCTTTGCTGACAGGGCTATCAAGACTAACCTCGGATCCAAGATCAGCCATCAGAAGAAGTGCCTTGGAAGTTCTTTTCAACATTTTGAAGGATCATGGTCATCTTTTTACTCGTCCATTTTGGACTAACGTTTTCAATTCTGTAATTTTTCCTATATTCAAGTCTGCAAGCGTCAATAAAGAGAGTCAAATTGATGAAGACCAGTCTTCACCAGCTTCCGGATCTGCGCATACTGATGGATGTACCTGGGATTCCGAAACTTCTACAGTGGCAGCTCAATGTCTAGTGGATCTATTTGTCAGTTTCTATAATGTTGTGAGGTCTCAACTCCCTGGCTTGGCTTCTGTTCTGTCTGGTTTCATAAAAAGTCCAGTTCAAGGTTCTGCAAGCACTGGGGTATCGGCGTTGATGTGTTTTGCGAGTGAATTGGGATATAGACTATTGGAAGATGAATGGGCACTCATATTTATTGCTTTGAAAGAGGCAGCTGCTTCTACCCGACCAGGATTGTTAAAGCTTGTGAGAACAATGGATGGCATTGAGATTCTTGATATTTCTCAGTCGTACAATGATTCAGAAATGTTATCCGGCGATGGATTTGTCAATGGGGTTTCTGAGGATGACAACTTGCAAACTGCAGCATATGTTGTTTCAAGGATGAAGAGTCACATAGCCACACAGCTACTTATTATACAGGTAATAACCGATTTGTACAGAATGCACCATCAATCACTGTATGCCAGTAATGTTGCAATACTTGTTGATATACTTTCGTCGGTTGCATCTCATGCCCACCAATTGGACGCCGAGAAAACCCTACAGATGAAGCTGCAGAGGGCATGCTCAAGCCTCGACATCTCTGATCCGCCCATGGTTCACTTTGAGAACGAGTCCTACCAAAGGTACCTCAACTTTTTGCACGACGTTCTCATCAATAACCCGTTTGTGGCTGAGGAGATGAAGTTAGAGCCACAACTTGTTTCTGTGTGCGAAGAAGCTTTAAAGATATACTTAGACTGTGCCATGTCCGAATCTGATGAGCAGGAACCAGGTAGTAATAATAATAGTATCCCAGCGGTGGTTCACTGGATTTTACCACTTGGTACTGCAAAGAAGGAAGAATTGGGTGCAAGGACTTGTCTAGTTGTCTCGGCACTGCGGGTTTTGAGTGGACTGGGGAAGGATGCATTTAGGAGTTACGTTTCTCGATTATTCCCGATGTTGGTAGACCTGGTCAGGAGCGAGCATAGCTCAGGAGAAGTTCAGCTCCTTCTGAGCAATATGTTCCAATCATGTATAGGCCCAATAATTATGAAATTGTGACATAAAATATAAAAA

Network for GWHGAAZE018244

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF16213.6	DCB	24	210	2.10E-28
PF12783.8	Sec7_N	366	430	1.00E-12
PF01369.21	Sec7	581	762	2.50E-70
PF09324.11	DUF1981	1129	1211	4.00E-30
PF16206.6	Mon2_C	1302	1362	1.80E-06

Protein Sequence

>GWHPAAZE018255
MMGDCSFVTVLFLGGPSRCGWVLGPSLDKIIKNVAWRKHSQLVAASKSALDKLDTLSDSADPFSCTPLYGFSSPDAEFVLQPLVMALESGSVKVVEPALDCVFRLFSFGLIRCEIDRPDGNDKPSVVYRIIECVCKCGALGEEGIELTSLKVLLSAVRSSSVLIRGDCLVQVVRSCYNVYLGGLNGTNQICAKSVLAQMMIIVFARMEQDNMVVSFRTVSVAELLEFTDRNLNEGSSILFVQNFINEVVEANERVFDTKSSLDLQNGKTEKNGDPVDAESNKEVANSDGFSKLREDGFMLFKNLCKLSMKFSSQENADDQILLRGKILSLELLKPVTQATYNSEEAFHEFFGKEDQEAPTIFADILKSGLKAEIGIFFPMLILRVLENVLQPSFLQKMTILNLLENMSQDSQIIIDIFVNYDCDVEAPNIFERHGAFYLFSVFSAPMFSSCHFSLAMRVVNCIKTLLIPSDICRTVNGLLKTALGPPPGSTTTLSPAHDLTFRLESVKCLVRIIKSMGVWMDQQLRIGEFSLPNTSDNENIVDNHASLGGDEVSLPDLELHSEATPGISDAATLEQRRTYKLELQKGVSLFNRKPSKGIDFLVSSKKISGTPEAVASFLKKASGLNESMIGDYLGERDEFPLKVMHAYVDSFNFEKMDFGEAIRFFLRGFRLPGEAQKIDRIMEKFAERFCKCNPSSFSSAETAYVLAYSVIMLNTDAHNSMVKDKMTKSDFIRNNRGIDDGKDLPEEYLGALYDQIVKNEIKMKADTSVPQSKQANSVNKLLGLDGILNLVWKQPEEKPLGANGLLIKHIQEQFKAKSGKSESVYYTVVDAAILRFMIEVCWGPMLAAYSVTLDQSDDKSATSQCLFGFRHAVHVTAVMGMQTQRDAFVTTVAKFTNLHCAADMKQKNVDAVKAMISIAIEDGNYLQEAWEHILTCLSRFEHLQLLGEGAPSDASYFSASNTETDEKAQKATGFTNLKKKGSLQNPAVMAVVRGGSYDSPHRGVNASGLVTPEQISNFISNLNLLDQIGNFELNHIFAHSQRLNSEAIVAFVKALCKVSMSELQSPTDPRVFSLTKLVEVAHYNMNRIRLVWSRIWSVLSDFFVSVGLSENLSVAIFVMDSLRQLSMKFLEREELANYNFQNEFLRPFVIVMQRSNSAEIRELIVRCISQMVLSRVSNVKSGWKSVFMVFTAAAADERKNIVLLAFETMEKIVREYFPYITETETATFTDCVRCLITFTNSRFNSDVSFNAIAFLRFCAVKLAEGGLVCTEKSKDGDSSTPIPNDDASDGQTGTDKDDNVTFWMPLLTGLSRLTSDPRSAIRRSALEVLFNILKDHGHLFTRPFWTNVFNSVIFPIFKSASVNKESQIDEDQSSPASGSAHTDGCTWDSETSTVAAQCLVDLFVSFYNVVRSQLPGLASVLSGFIKSPVQGSASTGVSALMCFASELGYRLLEDEWALIFIALKEAAASTRPGLLKLVRTMDGIEILDISQSYNDSEMLSGDGFVNGVSEDDNLQTAAYVVSRMKSHIATQLLIIQVITDLYRMHHQSLYASNVAILVDILSSVASHAHQLDAEKTLQMKLQRACSSLDISDPPMVHFENESYQRYLNFLHDVLINNPFVAEEMKLEPQLVSVCEEALKIYLDCAMSESDEQEPGSNNNSIPAVVHWILPLGTAKKEELGARTCLVVSALRVLSGLGKDAFRSYVSRLFPMLVDLVRSEHSSGEVQLLLSNMFQSCIGPIIMKL

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K18442	ARFGEF, BIG	Endocytosis	map04144

Gene Ontology

GO term	Ontology	Name
GO:0032012	biological_process	regulation of ARF protein signal transduction
GO:0005086	molecular_function	ARF guanyl-nucleotide exchange factor activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	20.285
	SRR3591706	second leaf	10.173
	SRR3591707	mature leaf	8.706
	SRR3591708	Shoot apex	12.370
	SRR3591709	Stem	19.582
	SRR3591710	White floral bud	14.811
	SRR3591711	White flower	14.022
	SRR3591712	Green floral bud	17.755
	SRR3591713	Yellow flower	10.867
SRP173429	SRR8316895	Juvenile bud stage	11.841
	SRR8316896	Juvenile bud stage	16.093
	SRR8316897	Juvenile bud stage	7.022
	SRR8316894	Third green stage	6.537
	SRR8316900	Third green stage	16.565
	SRR8316901	Third green stage	14.753
	SRR8316898	Complete white stage	4.284
	SRR8316899	Complete white stage	13.463
	SRR8316903	Complete white stage	10.229
	SRR8316902	Silver flowering stage	4.813
	SRR8316904	Silver flowering stage	9.225
	SRR8316905	Silver flowering stage	3.592
	SRR8316906	Gold flowering stage	10.530
	SRR8316907	Gold flowering stage	11.224
	SRR8316908	Gold flowering stage	11.657
SRP132670	SRR6706286	Control	8.187
	SRR6706287	Light intensity 50%	9.623
	SRR6706288	Light intensity 20%	10.000
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.979
	CNS0095593	Slightly white alabastrum(diploid) 2	8.623
	CNS0095594	Slightly white alabastrum(diploid) 3	10.087
	CNS0095595	Whole white alabastrum(diploid) 2	8.790
	CNS0095596	Whole white alabastrum(diploid) 3	9.986
	CNS0095597	Whole white alabastrum(diploid) 4	9.231
	CNS0095598	Silvery flower (diploied) 1	10.590
	CNS0095599	Silvery flower (diploied) 2	9.390
	CNS0095600	Silvery flower (diploied) 3	16.199
	CNS0095601	Golden flower (diploid) 1	8.948
	CNS0095602	Golden flower (diploid) 2	17.563
	CNS0095603	Golden flower (diploid) 3	16.189
	CNS0095604	Slightly white alabastrum(tetraploid) 1	12.173
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.985
	CNS0095606	Slightly white alabastrum(tetraploid) 3	16.407
	CNS0095607	Whole white alabastrum(tetraploid) 1	11.778
	CNS0095608	Whole white alabastrum(tetraploid) 2	10.860
	CNS0095609	Whole white alabastrum(tetraploid) 3	16.546
	CNS0095610	Silvery flower (diploied) 1	12.968
	CNS0095611	Silvery flower (diploied) 2	13.614
	CNS0095612	Silvery flower (diploied) 3	14.319
	CNS0095613	Golden flower (tetraploid) 1	6.852
	CNS0095614	Golden flower (tetraploid) 2	13.415
	CNS0095615	Golden flower (tetraploid) 3	14.496
CRA001975	CRR073297	Stem 1	13.345
	CRR073298	Stem 2	10.932
	CRR073299	Stem 3	6.536
	CRR073300	Leaf 1	12.858
	CRR073301	Leaf 2	10.240
	CRR073302	Leaf 3	6.877
	CRR073303	Juvenile bud 1	10.239
	CRR073304	Juvenile bud 2	5.897
	CRR073305	Juvenile bud 3	10.091
	CRR073306	Third green 1	5.853
	CRR073307	Third green 2	4.076
	CRR073308	Third green 3	6.151
	CRR073309	Second white 1	4.706
	CRR073310	Second white 2	7.283
	CRR073311	Second white 3	9.369
	CRR073312	Silver flowering 1	9.298
	CRR073313	Silver flowering 2	9.531
	CRR073314	Silver flowering 3	9.088
	CRR073315	Gold flowering 1	3.522
	CRR073316	Gold flowering 2	5.940
	CRR073317	Gold flowering 3	2.973
	CRR073318	Tawny withering 1	11.823
	CRR073319	Tawny withering 2	10.892
	CRR073320	Tawny withering 3	11.974