Gene detail

Detail information of GWHGAAZE018362

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004230885.1	1.168E-167	PREDICTED: triosephosphate isomerase, chloroplastic [Solanum lycopersicum]
Swissprot	tr\|P48496\|TPIC_SPIOL	2E-158	Triosephosphate isomerase, chloroplastic (Precursor)
trEMBL	tr\|K4B3X5\|K4B3X5_SOLLC	4E-168	Triosephosphate isomerase {ECO:0000256\|RuleBase:RU000517}
TAIR10	AT2G21170.1	3E-118	triosephosphate isomerase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	18528998	18532364	+
GWHAAZE00000005	mRNA	18528998	18532364	+
GWHAAZE00000005	exon	18528998	18529222	+
GWHAAZE00000005	exon	18529859	18529885	+
GWHAAZE00000005	exon	18530183	18530252	+
GWHAAZE00000005	exon	18530440	18530563	+
GWHAAZE00000005	exon	18530787	18530871	+
GWHAAZE00000005	exon	18530954	18531135	+
GWHAAZE00000005	exon	18531233	18531393	+
GWHAAZE00000005	exon	18531598	18531681	+
GWHAAZE00000005	exon	18532014	18532364	+
GWHAAZE00000005	CDS	18528998	18529222	+
GWHAAZE00000005	CDS	18529859	18529885	+
GWHAAZE00000005	CDS	18530183	18530252	+
GWHAAZE00000005	CDS	18530440	18530563	+
GWHAAZE00000005	CDS	18530787	18530871	+
GWHAAZE00000005	CDS	18530954	18531135	+
GWHAAZE00000005	CDS	18531233	18531393	+
GWHAAZE00000005	CDS	18531598	18531650	+
GWHAAZE00000005	three_prime_UTR	18531651	18531681	+
GWHAAZE00000005	three_prime_UTR	18532014	18532364	+

Transcript Sequence
>GWHTAAZE018384 ATGGCAATGGTGTCCACATCTCTCGTATCCCAAGTTTCTGGCCCCAAATCATCCACCACCACGACCTCGTCGTATTCCCCTCTCTTCTCTGGATTACGTCGATCCTGCTCCAAGCTCGAATCCAATCCCCCTCAGTCTCTCTTCCACCACGTTGATTCTCATCTCCGCCTCTCTTCCCCTCGTAAGGCTTGCAGAGGTGTCGTCGCCATGGCCGGCTCCGGCAAGTTCTTTGTTGGTGGCAACTGGAAATGTAATGGGACAAAGGATTCTATTAGCAAGCTCGTCACGGACTTGAACAGTGCAAAGCTCGAGGCTGATGTTGATGTTGTTGTTTCACCTCCATTTGTTTACATCGATCAAGTGAAGAACTCTTTAACTGATCGGATTGAGATAGCTGCTCAGAATTCGTGGATTGGAAAGGGCGGAGCTTTTACCGGAGAAATCAGCGTGGAGCAATTGAAAGATATTGGATGCAAGTGGGTAATTCTCGGGCATTCGGAGCGGAGGCATGTAATTGGAGAAGATAACGAGTTCATAGGAAAGAAAGCTGCTTATGCCTTGAGCCAGAACCTTGGAATAATAGCCTGCATTGGAGAGCTTCTGGAAGAAAGAGAAGCAGGCAAAACATTTGATGTTTGTTTTGAGCAAATGAAGGCCTTTGCAGGCAATTTTCTTGTTTCTCATTTCCCATTTCTCATTAATCTAGCACCACCTTGGGATGATGTTGTCATTGCATATGAGCCAGTATGGGCAATTGGAACTGGTAAAGTGGCCTCGCCTCAGCAGGCTCAGGAAGTACATGTGGCTGTTCGTGATTGGATTAGTAAAAATGTTTCAGCAGAAGTTGCTTCTAAGACACGTATTATTTATGGAGGATCTGTAAACGGGGGTAACTGTGCTGAGTTGGCAAAAGCAAGAAGATATTGATGGATTTCTTGTAGGTGGTGCTTCCTTAAAGGGTCCCGAGTTTGCAACCATTATTAACTCTGTAACTTCTAAGAAGGTTGCTGCTTGATCGTTTGACATGGTTTTTGGCAACTGGGCAAATAAATGTCTTAGAAAATCACACCTTTTAGGTTGCCATCGGCGTTTGAGCTGGTTCAAGTGGGTGGAATTTTTTGATCATTTTCATTTTTTTCCTGCTATAAAGATGAAGAACAACTCGTGCTCTTGTTAACTAAGTGCTCAGTTTGTTTGAACAAATAAAGATTATGAAATAGATTTATTGCAATTTTAATGGCCTAATATGATGTCATCTGTTGCACTTTTACTATTAACAATAAGGTATAATTCAGTTGCTTTTGCTGCT

Network for GWHGAAZE018362

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00121.19	TIM	77	305	2.80E-75

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01803	TPI, tpiA	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Biosynthesis of amino acids	map01230
		Glycolysis / Gluconeogenesis	map00010
		Fructose and mannose metabolism	map00051
		Inositol phosphate metabolism	map00562
		Carbon fixation in photosynthetic organisms	map00710

Gene Ontology

GO term	Ontology	Name
GO:0006096	biological_process	glycolytic process
GO:0004807	molecular_function	triose-phosphate isomerase activity
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	222.767
	SRR3591706	second leaf	388.210
	SRR3591707	mature leaf	274.797
	SRR3591708	Shoot apex	211.617
	SRR3591709	Stem	149.575
	SRR3591710	White floral bud	96.852
	SRR3591711	White flower	66.962
	SRR3591712	Green floral bud	181.939
	SRR3591713	Yellow flower	44.904
SRP173429	SRR8316895	Juvenile bud stage	140.821
	SRR8316896	Juvenile bud stage	180.758
	SRR8316897	Juvenile bud stage	103.438
	SRR8316894	Third green stage	75.134
	SRR8316900	Third green stage	310.848
	SRR8316901	Third green stage	270.385
	SRR8316898	Complete white stage	87.519
	SRR8316899	Complete white stage	268.968
	SRR8316903	Complete white stage	103.966
	SRR8316902	Silver flowering stage	53.848
	SRR8316904	Silver flowering stage	49.380
	SRR8316905	Silver flowering stage	34.436
	SRR8316906	Gold flowering stage	93.541
	SRR8316907	Gold flowering stage	88.412
	SRR8316908	Gold flowering stage	97.334
SRP132670	SRR6706286	Control	208.461
	SRR6706287	Light intensity 50%	217.173
	SRR6706288	Light intensity 20%	251.524
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	155.539
	CNS0095593	Slightly white alabastrum(diploid) 2	174.391
	CNS0095594	Slightly white alabastrum(diploid) 3	153.803
	CNS0095595	Whole white alabastrum(diploid) 2	172.743
	CNS0095596	Whole white alabastrum(diploid) 3	199.972
	CNS0095597	Whole white alabastrum(diploid) 4	153.660
	CNS0095598	Silvery flower (diploied) 1	123.946
	CNS0095599	Silvery flower (diploied) 2	139.067
	CNS0095600	Silvery flower (diploied) 3	105.270
	CNS0095601	Golden flower (diploid) 1	116.947
	CNS0095602	Golden flower (diploid) 2	84.607
	CNS0095603	Golden flower (diploid) 3	82.810
	CNS0095604	Slightly white alabastrum(tetraploid) 1	197.730
	CNS0095605	Slightly white alabastrum(tetraploid) 2	182.255
	CNS0095606	Slightly white alabastrum(tetraploid) 3	280.454
	CNS0095607	Whole white alabastrum(tetraploid) 1	126.270
	CNS0095608	Whole white alabastrum(tetraploid) 2	161.014
	CNS0095609	Whole white alabastrum(tetraploid) 3	301.608
	CNS0095610	Silvery flower (diploied) 1	134.253
	CNS0095611	Silvery flower (diploied) 2	183.516
	CNS0095612	Silvery flower (diploied) 3	113.451
	CNS0095613	Golden flower (tetraploid) 1	64.515
	CNS0095614	Golden flower (tetraploid) 2	100.683
	CNS0095615	Golden flower (tetraploid) 3	18.145
CRA001975	CRR073297	Stem 1	285.658
	CRR073298	Stem 2	266.634
	CRR073299	Stem 3	315.137
	CRR073300	Leaf 1	284.025
	CRR073301	Leaf 2	301.304
	CRR073302	Leaf 3	387.656
	CRR073303	Juvenile bud 1	425.890
	CRR073304	Juvenile bud 2	421.181
	CRR073305	Juvenile bud 3	310.450
	CRR073306	Third green 1	181.491
	CRR073307	Third green 2	122.008
	CRR073308	Third green 3	119.118
	CRR073309	Second white 1	123.165
	CRR073310	Second white 2	65.218
	CRR073311	Second white 3	48.138
	CRR073312	Silver flowering 1	30.296
	CRR073313	Silver flowering 2	30.921
	CRR073314	Silver flowering 3	31.489
	CRR073315	Gold flowering 1	595.366
	CRR073316	Gold flowering 2	644.938
	CRR073317	Gold flowering 3	555.160
	CRR073318	Tawny withering 1	160.020
	CRR073319	Tawny withering 2	125.784
	CRR073320	Tawny withering 3	161.596