Gene detail

Detail information of GWHGAAZE018425

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002313028.2	9.4375E-174	hypothetical protein POPTR_0009s12340g [Populus trichocarpa]
Swissprot	tr\|Q6NPM8\|HIS7_ARATH	5E-157	Bifunctional phosphatase IMPL2, chloroplastic (Precursor)
trEMBL	tr\|B9HRJ2\|B9HRJ2_POPTR	4E-174	Uncharacterized protein {ECO:0000313\|EMBL:EEE86983.2}
TAIR10	AT4G39120.1	2E-125	myo-inositol monophosphatase like 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	19350864	19354141	-
GWHAAZE00000005	mRNA	19350864	19354141	-
GWHAAZE00000005	exon	19353723	19354141	-
GWHAAZE00000005	exon	19353559	19353637	-
GWHAAZE00000005	exon	19352652	19352746	-
GWHAAZE00000005	exon	19352503	19352552	-
GWHAAZE00000005	exon	19352029	19352153	-
GWHAAZE00000005	exon	19351841	19351907	-
GWHAAZE00000005	exon	19351426	19351515	-
GWHAAZE00000005	exon	19351151	19351262	-
GWHAAZE00000005	exon	19350864	19351030	-
GWHAAZE00000005	five_prime_UTR	19354048	19354141	-
GWHAAZE00000005	CDS	19353723	19354047	-
GWHAAZE00000005	CDS	19353559	19353637	-
GWHAAZE00000005	CDS	19352652	19352746	-
GWHAAZE00000005	CDS	19352503	19352552	-
GWHAAZE00000005	CDS	19352029	19352153	-
GWHAAZE00000005	CDS	19351841	19351907	-
GWHAAZE00000005	CDS	19351426	19351515	-
GWHAAZE00000005	CDS	19351151	19351262	-
GWHAAZE00000005	CDS	19350954	19351030	-
GWHAAZE00000005	three_prime_UTR	19350864	19350953	-

Transcript Sequence
>GWHTAAZE018447 TCGGTCCTGTCTCTGTACAACTTCCCCTGCACAAAATTTCATTTCTCTAAACCCCCTGCAAATTAGACCAAAAAAAAAACCCTGCAAATCTGCAATGCCTCTTCTTCAGCCTCACTTTCTCTCTCTAAACCACTCCACCCAACTTCTTCCTCTCTCATCAAACCATTCTTCACTCCCATCCTTAAACAACATTACCATCTTCACATCCTCTCGCTCACCCCTCAATTTCCCCCTCTCTCTGAAATTCAATTCTACGCTAACCTCTTCCTGCACTCGATCAACCCCAAGTTCAATGCCCTTCCAAGATCACGACCTTAACCTGTTCGCCGATGTCGCCAACAAACTCGCTGATGCCGCCGGGGAAGTCATTCGGAAGTATTTCCGCAAAAAGTTTGAGATTCTCGACAAGGAAGATTCCAGTCCTGTGACAATTGCTGATCGAGAGGCCGAAGGTGCGATGATTTCAGTCATCCAAGAGAATTTTCCTAATCATGCAATTTACGGGGAGGAGAATGGTTGGAGGTGTAAAGAGAAGTTTGCTGACTATGTTTGGGTCTTAGATCCCATAGACGGGACAAAAAGTTTCATTACTGGGAAACCCTTGTTTGGCACTCTCATTGCGCTGTTACACAGAGGCAAACCGATACTTGGCATAATTGATCAGCCTGTGTTAAGAGAAAGATGGGTTGGGATAACTGGAAGGAGAACTGTGTTGAATGGGCAAGAAGCTTCTACGCGCAAGTGTGCAAAACTTTCACAAGCTTATCTGTACACGACTAGTCCACATCTGTTCAGTGGAGACGCTGAAGTTGCATTTGCTCGAGTTAGAAATAAGGTAAAAGTGCCACTATACGGCTGCGATTGTTATGCCTATGCCCTTTTGGCCTCTGGTTTTGTGGATCTTGTAATTGAATCTGGCCTCAAGCCATATGATTTCCTTTCACTGATACCGGTGATAGAAGGTGCTGGTGGAGTTATAACCGATTGGAAAGGACATCAACTTCAGTGGGAGGCTTCTTCAGATTCACGCCCATTAAGTTTTAATGTAATTGCAGCCGGGGATAAACACCTTCACCAACAAGCCTTGGATTCACTAGAATGGCAGCAATATTAGAGTTGCACTGAATCCACCCGCCATAAGAGGGTAAGAAACTTTCACTTAAGATGTTTGGCTTCAGATATTTATTAACTGCCAATAGTGTTT

Network for GWHGAAZE018425

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00459.26	Inositol_P	77	331	5.30E-52

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K18649	IMPL2	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Biosynthesis of amino acids	map01230
		Ascorbate and aldarate metabolism	map00053
		Inositol phosphate metabolism	map00562
		Histidine metabolism	map00340
		Phosphatidylinositol signaling system	map04070

Gene Ontology

GO term	Ontology	Name
GO:0046854	biological_process	phosphatidylinositol phosphorylation
GO:0004401	molecular_function	histidinol-phosphatase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	14.914
	SRR3591706	second leaf	5.924
	SRR3591707	mature leaf	4.212
	SRR3591708	Shoot apex	20.091
	SRR3591709	Stem	9.670
	SRR3591710	White floral bud	12.016
	SRR3591711	White flower	15.571
	SRR3591712	Green floral bud	18.322
	SRR3591713	Yellow flower	9.393
SRP173429	SRR8316895	Juvenile bud stage	18.333
	SRR8316896	Juvenile bud stage	29.317
	SRR8316897	Juvenile bud stage	14.362
	SRR8316894	Third green stage	12.174
	SRR8316900	Third green stage	29.022
	SRR8316901	Third green stage	24.526
	SRR8316898	Complete white stage	4.122
	SRR8316899	Complete white stage	19.875
	SRR8316903	Complete white stage	7.529
	SRR8316902	Silver flowering stage	4.161
	SRR8316904	Silver flowering stage	6.257
	SRR8316905	Silver flowering stage	2.147
	SRR8316906	Gold flowering stage	7.979
	SRR8316907	Gold flowering stage	5.534
	SRR8316908	Gold flowering stage	6.040
SRP132670	SRR6706286	Control	26.060
	SRR6706287	Light intensity 50%	27.072
	SRR6706288	Light intensity 20%	27.781
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	20.608
	CNS0095593	Slightly white alabastrum(diploid) 2	18.400
	CNS0095594	Slightly white alabastrum(diploid) 3	25.261
	CNS0095595	Whole white alabastrum(diploid) 2	15.964
	CNS0095596	Whole white alabastrum(diploid) 3	14.210
	CNS0095597	Whole white alabastrum(diploid) 4	14.717
	CNS0095598	Silvery flower (diploied) 1	12.248
	CNS0095599	Silvery flower (diploied) 2	13.498
	CNS0095600	Silvery flower (diploied) 3	10.923
	CNS0095601	Golden flower (diploid) 1	7.479
	CNS0095602	Golden flower (diploid) 2	8.840
	CNS0095603	Golden flower (diploid) 3	9.765
	CNS0095604	Slightly white alabastrum(tetraploid) 1	21.498
	CNS0095605	Slightly white alabastrum(tetraploid) 2	19.575
	CNS0095606	Slightly white alabastrum(tetraploid) 3	24.251
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.680
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.869
	CNS0095609	Whole white alabastrum(tetraploid) 3	18.308
	CNS0095610	Silvery flower (diploied) 1	10.380
	CNS0095611	Silvery flower (diploied) 2	11.749
	CNS0095612	Silvery flower (diploied) 3	6.305
	CNS0095613	Golden flower (tetraploid) 1	4.282
	CNS0095614	Golden flower (tetraploid) 2	10.136
	CNS0095615	Golden flower (tetraploid) 3	2.118
CRA001975	CRR073297	Stem 1	35.427
	CRR073298	Stem 2	34.790
	CRR073299	Stem 3	28.669
	CRR073300	Leaf 1	26.740
	CRR073301	Leaf 2	29.775
	CRR073302	Leaf 3	30.349
	CRR073303	Juvenile bud 1	22.622
	CRR073304	Juvenile bud 2	17.639
	CRR073305	Juvenile bud 3	24.454
	CRR073306	Third green 1	3.084
	CRR073307	Third green 2	2.757
	CRR073308	Third green 3	3.983
	CRR073309	Second white 1	4.176
	CRR073310	Second white 2	5.351
	CRR073311	Second white 3	4.890
	CRR073312	Silver flowering 1	2.911
	CRR073313	Silver flowering 2	1.947
	CRR073314	Silver flowering 3	3.182
	CRR073315	Gold flowering 1	10.104
	CRR073316	Gold flowering 2	12.874
	CRR073317	Gold flowering 3	7.923
	CRR073318	Tawny withering 1	17.579
	CRR073319	Tawny withering 2	16.500
	CRR073320	Tawny withering 3	14.214