Detail information of GWHGAAZE018507


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010647802.18.08518E-24PREDICTED: B3 domain-containing protein Os01g0723500-like [Vitis vinifera]
Swissprottr|Q8S2E6|Y1235_ORYSJ9E-16B3 domain-containing protein Os01g0723500
trEMBLtr|V4SBX5|V4SBX5_9ROSI2E-23Uncharacterized protein {ECO:0000313|EMBL:ESR36325.1}
TAIR10AT3G18990.17E-12AP2/B3-like transcriptional factor family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene2049446820496073-
GWHAAZE00000005mRNA2049446820496073-
GWHAAZE00000005exon2049571320496073-
GWHAAZE00000005exon2049534720495445-
GWHAAZE00000005exon2049502920495172-
GWHAAZE00000005exon2049482220494942-
GWHAAZE00000005exon2049446820494528-
GWHAAZE00000005CDS2049571320496073-
GWHAAZE00000005CDS2049534720495445-
GWHAAZE00000005CDS2049502920495172-
GWHAAZE00000005CDS2049485120494942-
GWHAAZE00000005three_prime_UTR2049482220494850-
GWHAAZE00000005three_prime_UTR2049446820494528-
Transcript Sequence

Network for GWHGAAZE018507

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02362.22B34714.70E-13
PF02178.20AT_hook1341450.0047
PF02178.20AT_hook1751830.62
PF02178.20AT_hook2152250.086
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyB3

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003677molecular_functionDNA binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.000
SRR3591706second leaf0.000
SRR3591707mature leaf0.000
SRR3591708Shoot apex0.275
SRR3591709Stem0.000
SRR3591710White floral bud0.419
SRR3591711White flower0.359
SRR3591712Green floral bud2.776
SRR3591713Yellow flower0.203
SRP173429 SRR8316895Juvenile bud stage 0.731
SRR8316896Juvenile bud stage 0.729
SRR8316897Juvenile bud stage 0.280
SRR8316894Third green stage 1.358
SRR8316900Third green stage 3.132
SRR8316901Third green stage 2.078
SRR8316898Complete white stage 0.584
SRR8316899Complete white stage 1.635
SRR8316903Complete white stage 1.184
SRR8316902Silver flowering stage1.014
SRR8316904Silver flowering stage0.695
SRR8316905Silver flowering stage0.414
SRR8316906Gold flowering stage 0.226
SRR8316907Gold flowering stage 0.537
SRR8316908Gold flowering stage 0.646
SRP132670SRR6706286Control3.866
SRR6706287Light intensity 50%3.063
SRR6706288Light intensity 20%3.505
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.655
CNS0095593Slightly white alabastrum(diploid) 20.053
CNS0095594Slightly white alabastrum(diploid) 31.608
CNS0095595Whole white alabastrum(diploid) 20.343
CNS0095596Whole white alabastrum(diploid) 30.348
CNS0095597Whole white alabastrum(diploid) 40.787
CNS0095598Silvery flower (diploied) 10.474
CNS0095599Silvery flower (diploied) 20.000
CNS0095600Silvery flower (diploied) 30.886
CNS0095601Golden flower (diploid) 10.513
CNS0095602Golden flower (diploid) 20.118
CNS0095603Golden flower (diploid) 30.378
CNS0095604Slightly white alabastrum(tetraploid) 10.412
CNS0095605Slightly white alabastrum(tetraploid) 20.588
CNS0095606Slightly white alabastrum(tetraploid) 31.199
CNS0095607Whole white alabastrum(tetraploid) 10.458
CNS0095608Whole white alabastrum(tetraploid) 20.255
CNS0095609Whole white alabastrum(tetraploid) 32.856
CNS0095610Silvery flower (diploied) 12.357
CNS0095611Silvery flower (diploied) 21.469
CNS0095612Silvery flower (diploied) 30.427
CNS0095613Golden flower (tetraploid) 10.364
CNS0095614Golden flower (tetraploid) 21.374
CNS0095615Golden flower (tetraploid) 30.303
CRA001975CRR073297Stem 11.538
CRR073298Stem 21.059
CRR073299Stem 31.200
CRR073300Leaf 11.364
CRR073301Leaf 21.597
CRR073302Leaf 31.487
CRR073303Juvenile bud 10.773
CRR073304Juvenile bud 20.736
CRR073305Juvenile bud 30.804
CRR073306Third green 10.194
CRR073307Third green 20.000
CRR073308Third green 30.001
CRR073309Second white 10.000
CRR073310Second white 20.000
CRR073311Second white 30.119
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.067
CRR073315Gold flowering 10.384
CRR073316Gold flowering 20.059
CRR073317Gold flowering 30.711
CRR073318Tawny withering 10.043
CRR073319Tawny withering 20.151
CRR073320Tawny withering 30.185