Gene detail

Detail information of GWHGAAZE018567

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011000143.1	0	PREDICTED: phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN-like [Populus euphratica]
trEMBL	tr\|A0A022RBL3\|A0A022RBL3_ERYGU	0	Uncharacterized protein {ECO:0000313\|EMBL:EYU37646.1}
TAIR10	AT3G19420.1	3E-175	PTEN 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	21253608	21259655	+
GWHAAZE00000005	mRNA	21253608	21259655	+
GWHAAZE00000005	exon	21253608	21254021	+
GWHAAZE00000005	exon	21254435	21254536	+
GWHAAZE00000005	exon	21254626	21254682	+
GWHAAZE00000005	exon	21254969	21255034	+
GWHAAZE00000005	exon	21255878	21256054	+
GWHAAZE00000005	exon	21256154	21256240	+
GWHAAZE00000005	exon	21256340	21256427	+
GWHAAZE00000005	exon	21256635	21256711	+
GWHAAZE00000005	exon	21256830	21256896	+
GWHAAZE00000005	exon	21257449	21257495	+
GWHAAZE00000005	exon	21258225	21258355	+
GWHAAZE00000005	exon	21258464	21258533	+
GWHAAZE00000005	exon	21259302	21259655	+
GWHAAZE00000005	CDS	21253608	21254021	+
GWHAAZE00000005	CDS	21254435	21254536	+
GWHAAZE00000005	CDS	21254626	21254682	+
GWHAAZE00000005	CDS	21254969	21255034	+
GWHAAZE00000005	CDS	21255878	21256054	+
GWHAAZE00000005	CDS	21256154	21256240	+
GWHAAZE00000005	CDS	21256340	21256427	+
GWHAAZE00000005	CDS	21256635	21256711	+
GWHAAZE00000005	CDS	21256830	21256896	+
GWHAAZE00000005	CDS	21257449	21257495	+
GWHAAZE00000005	CDS	21258225	21258355	+
GWHAAZE00000005	CDS	21258464	21258533	+
GWHAAZE00000005	CDS	21259302	21259655	+

Transcript Sequence
>GWHTAAZE018589 ATGGATGCTGGCTCTGCTGTTTCATCCATTCCTCCTGTTAAAGCTCCAGACACACAAACTGCCACTGTGGTGGACCCGGATAATTCTGCTGGCATTCCACCGCCTAAGCTCTCTGCTTCCGGCATATCCACATGGGCTAAAAGCTTGAAAATTTCCCAGTCTTTTTCAGGCACACAAGATGAGTCACTGTCTTCAGATACAAAATCAACATTCTCTCGTTTTACCAGTGGGTTTGGATTGCGCTCCCCGGGTGCTTCTCAGCCGAATGATAGTGTTGATGGAGGTTCCACAACAGAAGGATCTGGCTTTATTGGGGCACTCACGAAAGGGTTAGTTGACTCGTCTAAGAGTGCAGTGAAGGCTGTGCAGGTCAAGGCTCGCCACGTTGTATCTCAAAATAAACGAAGATTCCAGGAGGGAGGATTTGATTTAGATATGACGTACATTACAGAGAACATCATTGCTATGGGGTTCCCTGCTGGTGATATGAGCTCCGGTTTTTTAGGTTATGTGGAGGGATTCTATCGAAATCACATGGAAGAAGTGATCATGTTCTTTGAAACGTATCACAAGGATAAATACAAAGTCTACAATCTTTGTTCAGAGAGGCTGTATGATGCATCACTATTTGAAGGAAAGGTAGCTAGCTTCCCATTTGATGACCATAATTGCCCTCCCATTCAACTCATAATATCATTTTGTCATAGTGCATATGCATGGTTGAAGGAGGACATTGAGAATGTTGTGGTTGTGCACTGTAAGGCTGGAATGGCAAGGACTGGATTAATGATATCTAGCCTTCTTCTATATCTGAAGTTCTTTCCCACGGCTGAGGAGTGTATTGACTACTATAACCAGAAAAGGTGTTTTGACGGAAAAGGGCTTGTTCTTCCGAGTCAAATTTCAGCACCTTTTAGCTTATCTGTTCTTGAGAAAGTACCTTTTTACCCCTTCCTTACCTTGCAAGTTCACATTGTTCCCTTTTGTAGAGGTGTATGCTTAAAGGTTTTCGGCTTCACAGGTGCCCTTATTGGATTAGACCGTCAATTACTGTCTCCGATCATAATGTATTCACCAATTCACCCTGTAGTTTTGCTTTTGAAAATTTCTTCTGCATTGCATTTACTTATATCAGGTGTTCTGTTTTCAACAAAGAAGCATCCAAGAACCAAGGATCTGTCGTCTGAAGATATTTGGTTTACTTCACCAAAGAAAGGGGTAATGGTCTTTGCCCTGCCTGGGGAGCCAGGTCTTACAGAGTTGATCGGGGATTTCAAAATTCATTTCCATGACGGCCAAGGAGACTTTTACTGTTGGTTAAATACCACGATGATTGAGAACAGGAAAATTCTTAATACAAATGATCTCGACGGGTTTGACAAGAGAAAACTCCCATCGCCAGGGTTTCTAGTGGAGATTGTGCTTGTGGACTATGATGGAACTATTACTCCAACAAGGCCCCAAACAGAAACTGCAACAAGTACAACCAACTCTACTACTGAAACTAATACGCAATTCGACCAAATTGCCAATTTGACAAGCGGTACTGAACAAGTGTCTCTAGGAAGCACAGGGTCGACGAATATTCATTTTATTAGTGATGCAAAAAATGATGCCGGTGGGGGAGCTCTGACAAGCCGTGAGGTCCCTCTTGGAGAGGTAAGCGACTTCAAGGCGATGGCTGCGGATGCGTCTGTCTTTACATTTGGAGATGAAGATGATTATGAAAGTGATTAA

Network for GWHGAAZE018567

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01110	PTEN	Metabolic pathways	map01100
		Inositol phosphate metabolism	map00562
		FoxO signaling pathway	map04068
		Phosphatidylinositol signaling system	map04070
		Sphingolipid signaling pathway	map04071
		PI3K-Akt signaling pathway	map04151
		mTOR signaling pathway	map04150
		Autophagy - animal	map04140
		p53 signaling pathway	map04115
		Cellular senescence	map04218
		Focal adhesion	map04510
		Axon regeneration	map04361
		Longevity regulating pathway - worm	map04212

Gene Ontology

GO term	Ontology	Name
GO:0016311	biological_process	dephosphorylation
GO:0004725	molecular_function	protein tyrosine phosphatase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	32.950
	SRR3591706	second leaf	15.940
	SRR3591707	mature leaf	17.679
	SRR3591708	Shoot apex	23.328
	SRR3591709	Stem	40.638
	SRR3591710	White floral bud	33.675
	SRR3591711	White flower	33.188
	SRR3591712	Green floral bud	30.516
	SRR3591713	Yellow flower	25.750
SRP173429	SRR8316895	Juvenile bud stage	14.638
	SRR8316896	Juvenile bud stage	22.789
	SRR8316897	Juvenile bud stage	14.550
	SRR8316894	Third green stage	8.961
	SRR8316900	Third green stage	24.414
	SRR8316901	Third green stage	25.205
	SRR8316898	Complete white stage	10.510
	SRR8316899	Complete white stage	34.521
	SRR8316903	Complete white stage	17.776
	SRR8316902	Silver flowering stage	11.804
	SRR8316904	Silver flowering stage	16.779
	SRR8316905	Silver flowering stage	8.626
	SRR8316906	Gold flowering stage	24.304
	SRR8316907	Gold flowering stage	28.013
	SRR8316908	Gold flowering stage	34.651
SRP132670	SRR6706286	Control	11.236
	SRR6706287	Light intensity 50%	13.082
	SRR6706288	Light intensity 20%	14.294
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	17.387
	CNS0095593	Slightly white alabastrum(diploid) 2	17.172
	CNS0095594	Slightly white alabastrum(diploid) 3	16.755
	CNS0095595	Whole white alabastrum(diploid) 2	16.037
	CNS0095596	Whole white alabastrum(diploid) 3	15.597
	CNS0095597	Whole white alabastrum(diploid) 4	15.253
	CNS0095598	Silvery flower (diploied) 1	19.770
	CNS0095599	Silvery flower (diploied) 2	20.138
	CNS0095600	Silvery flower (diploied) 3	16.674
	CNS0095601	Golden flower (diploid) 1	24.173
	CNS0095602	Golden flower (diploid) 2	17.116
	CNS0095603	Golden flower (diploid) 3	16.455
	CNS0095604	Slightly white alabastrum(tetraploid) 1	20.980
	CNS0095605	Slightly white alabastrum(tetraploid) 2	16.661
	CNS0095606	Slightly white alabastrum(tetraploid) 3	34.239
	CNS0095607	Whole white alabastrum(tetraploid) 1	14.908
	CNS0095608	Whole white alabastrum(tetraploid) 2	11.980
	CNS0095609	Whole white alabastrum(tetraploid) 3	21.273
	CNS0095610	Silvery flower (diploied) 1	32.474
	CNS0095611	Silvery flower (diploied) 2	29.071
	CNS0095612	Silvery flower (diploied) 3	34.540
	CNS0095613	Golden flower (tetraploid) 1	19.516
	CNS0095614	Golden flower (tetraploid) 2	27.586
	CNS0095615	Golden flower (tetraploid) 3	24.748
CRA001975	CRR073297	Stem 1	13.318
	CRR073298	Stem 2	11.153
	CRR073299	Stem 3	9.512
	CRR073300	Leaf 1	20.100
	CRR073301	Leaf 2	16.442
	CRR073302	Leaf 3	10.623
	CRR073303	Juvenile bud 1	17.152
	CRR073304	Juvenile bud 2	9.437
	CRR073305	Juvenile bud 3	14.826
	CRR073306	Third green 1	5.714
	CRR073307	Third green 2	8.210
	CRR073308	Third green 3	7.647
	CRR073309	Second white 1	4.058
	CRR073310	Second white 2	5.616
	CRR073311	Second white 3	3.678
	CRR073312	Silver flowering 1	2.481
	CRR073313	Silver flowering 2	1.568
	CRR073314	Silver flowering 3	1.860
	CRR073315	Gold flowering 1	5.158
	CRR073316	Gold flowering 2	5.785
	CRR073317	Gold flowering 3	3.788
	CRR073318	Tawny withering 1	11.266
	CRR073319	Tawny withering 2	11.393
	CRR073320	Tawny withering 3	7.646