Gene detail

Detail information of GWHGAAZE018644

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004150272.1	4.63083E-61	PREDICTED: agamous-like MADS-box protein AGL62-like [Cucumis sativus]
Swissprot	tr\|Q9FKK2\|AGL62_ARATH	4E-45	Agamous-like MADS-box protein AGL62
trEMBL	tr\|A0A0A0KWA9\|A0A0A0KWA9_CUCSA	2E-61	Uncharacterized protein {ECO:0000313\|EMBL:KGN52732.1}
TAIR10	AT5G60440.1	1E-39	AGAMOUS-like 62

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	22240197	22241555	+
GWHAAZE00000005	mRNA	22240197	22241555	+
GWHAAZE00000005	exon	22240197	22241555	+
GWHAAZE00000005	CDS	22240197	22241555	+

Transcript Sequence
>GWHTAAZE018666 ATGGCGAAAATGGAGAATGAGAATAATCTACAAGTGACATTTTCAAAGCGTCGAACAGGCCTCTTCAAAAAGGCTAGCGAGCTTTGTATACTTTGTGGCGCTCAAGTATCCATAATTGTGTTCTCCCCTGGAGGTAAGGTCTTTTCTTTTGGCCATCCTTCAGTTGAGGCTGTCATTGATAGATTCCTCACCCGTGCCCCACCACCCACTGGTGGAACCCACCAGCTAATTGAGGCTCACCGTAACGCTCACCAAAAGGAGCTCAACGAGCAACTTGCTCAATCAGACGACACAATTGAGGCAGAGAGAAAGCGTCGTCAGGTTATTGACCAGATTATGATGGTTAGCCAGAGAGAACGGTGGTGGGAGGCTCCTACAGAGGAGCTTGCCTTTGATCAACTTGAGGAGGTGTTTGCGGCCATGAAGGGTTTTAAGGTTAATATGGACGATAAAGCCCATAGGATTATGGTGGATGCTGTGGTTCCATTTGGAAATGTGCCAAGGGGAGTTAGTGTTCCATTTGGTGGTGGAGCGAGTGGGTCTAGTAGTAGTGTGCCATTTGACGCTAGGGCGAGTGGGTCTAGTAGTATTTTTCAATTTGGTGCTGGGACAAGTGGTTCTAGGGGTGATGTTTCCATCGATTCTAGGGCAAATGAGTTTCGTAGTGGTGTTTCCTTTGGTGCTGGGCCAAATAGCTCTACGGGTGTTATTTCCACTGGTGCTGGTGCAAGTGGGTCCATATGTGTTGCTCCCTTTGATTCTAGGGCAAATGAGTTTCGTGGTGGTATTTCCTTTGGTGCTGAGGCAAGTGGGTCTAGGGCTCGTGATCCACTTGATGCTATGATAATTGCGTTAAGGGGTGGTGTTCCATTTGATACTAGGGCAGTTCGTTTAAGTAGTACTGCTCTCCTTAATGCTAGGGAAAGTAGGTCTACAAATATTGTTCCTTTTGACGCAAAGGCAAGCGGATCCGGTGACAGTGTTTCGTTTAATGGTAAGACAAGTGAGTTTAATAGCAGTGATCTATTTGATATTGTTAGGGCAAGTGGATTTGGTGGCGGTGTTTCCTTTGATGCTAGGGAAAGTGGGTCCACAAATGTTGTTCCTTTTGATTCTAGGGCAACCGGGTCCACAAGTATTATTCCTTTTGATTCTAGGGCAACCGGGTCCACAAGTATTGTCCCTTTTGATGCTAGGGCAAGCGGATCTAGTGATGGTAGGGCAAGTGGGTCCACAAGTATTGTTCCTTTTGATTCTAGGGCAACAAGTAGTATTGTTCCTTCGATGCCAGGGCAAGCAAATCTGGTGATGGCGTTTCCTTTGATGGTATGGCAAGTGGGTTTAATGCCAGTTCTCTAA

Network for GWHGAAZE018644

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00319.19	SRF-TF	3	50	1.50E-24

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MADS-M-type

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0045944	biological_process	positive regulation of transcription by RNA polymerase II
GO:0003677	molecular_function	DNA binding
GO:0046983	molecular_function	protein dimerization activity
GO:0000977	molecular_function	RNA polymerase II transcription regulatory region sequence-specific DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	1.099
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.113
	SRR8316896	Juvenile bud stage	0.026
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.169
	SRR8316901	Third green stage	0.051
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.155
	SRR8316903	Complete white stage	0.007
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.044
	SRR6706287	Light intensity 50%	0.017
	SRR6706288	Light intensity 20%	0.097
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.030
	CNS0095593	Slightly white alabastrum(diploid) 2	0.048
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.033
	CNS0095597	Whole white alabastrum(diploid) 4	0.131
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.045
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.053
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.126
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (diploied) 1	0.000
	CNS0095611	Silvery flower (diploied) 2	0.000
	CNS0095612	Silvery flower (diploied) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.145
	CRR073298	Stem 2	0.191
	CRR073299	Stem 3	0.062
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.001
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.001
	CRR073304	Juvenile bud 2	0.062
	CRR073305	Juvenile bud 3	0.034
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.379
	CRR073316	Gold flowering 2	0.834
	CRR073317	Gold flowering 3	1.753
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000