Detail information of GWHGAAZE018660


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrNP_001267942.17.1879E-175uncharacterized protein LOC100263479 [Vitis vinifera]
Swissprottr|O81884|GALDH_ARATH3E-162L-galactose dehydrogenase
trEMBLtr|A5JPK6|A5JPK6_VITVI3E-175L-galactose dehydrogenase {ECO:0000313|EMBL:ABQ41113.1}
TAIR10AT4G33670.19E-130NAD(P)-linked oxidoreductase superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene2241379022417323+
GWHAAZE00000005mRNA2241379022417323+
GWHAAZE00000005exon2241379022414063+
GWHAAZE00000005exon2241451122414722+
GWHAAZE00000005exon2241523922415302+
GWHAAZE00000005exon2241536522415537+
GWHAAZE00000005exon2241579522415923+
GWHAAZE00000005exon2241689322417323+
GWHAAZE00000005CDS2241379022414063+
GWHAAZE00000005CDS2241451122414722+
GWHAAZE00000005CDS2241523922415302+
GWHAAZE00000005CDS2241536522415537+
GWHAAZE00000005CDS2241579522415923+
GWHAAZE00000005CDS2241689322417024+
GWHAAZE00000005three_prime_UTR2241702522417323+
Transcript Sequence

Network for GWHGAAZE018660

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00248.22Aldo_ket_red541836.10E-30
PF00248.22Aldo_ket_red1872942.90E-13
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K17744GalDH Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Ascorbate and aldarate metabolismmap00053

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf73.645
SRR3591706second leaf26.087
SRR3591707mature leaf15.665
SRR3591708Shoot apex49.350
SRR3591709Stem57.855
SRR3591710White floral bud39.813
SRR3591711White flower34.342
SRR3591712Green floral bud42.492
SRR3591713Yellow flower24.504
SRP173429 SRR8316895Juvenile bud stage 32.663
SRR8316896Juvenile bud stage 43.074
SRR8316897Juvenile bud stage 24.080
SRR8316894Third green stage 14.782
SRR8316900Third green stage 41.806
SRR8316901Third green stage 45.281
SRR8316898Complete white stage 15.601
SRR8316899Complete white stage 58.117
SRR8316903Complete white stage 21.762
SRR8316902Silver flowering stage9.913
SRR8316904Silver flowering stage13.421
SRR8316905Silver flowering stage6.511
SRR8316906Gold flowering stage 19.982
SRR8316907Gold flowering stage 17.440
SRR8316908Gold flowering stage 19.252
SRP132670SRR6706286Control36.179
SRR6706287Light intensity 50%35.480
SRR6706288Light intensity 20%37.755
CNP0000432CNS0095592Slightly white alabastrum(diploid) 147.636
CNS0095593Slightly white alabastrum(diploid) 254.950
CNS0095594Slightly white alabastrum(diploid) 346.572
CNS0095595Whole white alabastrum(diploid) 243.727
CNS0095596Whole white alabastrum(diploid) 338.704
CNS0095597Whole white alabastrum(diploid) 439.790
CNS0095598Silvery flower (diploied) 149.763
CNS0095599Silvery flower (diploied) 248.331
CNS0095600Silvery flower (diploied) 335.638
CNS0095601Golden flower (diploid) 150.711
CNS0095602Golden flower (diploid) 240.424
CNS0095603Golden flower (diploid) 337.105
CNS0095604Slightly white alabastrum(tetraploid) 143.107
CNS0095605Slightly white alabastrum(tetraploid) 241.057
CNS0095606Slightly white alabastrum(tetraploid) 362.610
CNS0095607Whole white alabastrum(tetraploid) 142.877
CNS0095608Whole white alabastrum(tetraploid) 238.977
CNS0095609Whole white alabastrum(tetraploid) 341.331
CNS0095610Silvery flower (diploied) 131.689
CNS0095611Silvery flower (diploied) 241.427
CNS0095612Silvery flower (diploied) 329.220
CNS0095613Golden flower (tetraploid) 124.431
CNS0095614Golden flower (tetraploid) 227.965
CNS0095615Golden flower (tetraploid) 319.778
CRA001975CRR073297Stem 135.016
CRR073298Stem 236.542
CRR073299Stem 337.761
CRR073300Leaf 139.998
CRR073301Leaf 234.041
CRR073302Leaf 337.150
CRR073303Juvenile bud 139.118
CRR073304Juvenile bud 226.425
CRR073305Juvenile bud 341.669
CRR073306Third green 116.070
CRR073307Third green 216.328
CRR073308Third green 316.895
CRR073309Second white 117.535
CRR073310Second white 211.457
CRR073311Second white 38.060
CRR073312Silver flowering 18.612
CRR073313Silver flowering 212.220
CRR073314Silver flowering 39.436
CRR073315Gold flowering 122.181
CRR073316Gold flowering 226.343
CRR073317Gold flowering 322.095
CRR073318Tawny withering 158.050
CRR073319Tawny withering 249.618
CRR073320Tawny withering 351.191