Gene detail

Detail information of GWHGAAZE018772

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006351795.1	8.7527E-135	PREDICTED: peroxidase N1-like [Solanum tuberosum]
Swissprot	tr\|Q9XIV8\|PERN1_TOBAC	1E-124	Peroxidase N1 (Precursor)
trEMBL	tr\|M1AY17\|M1AY17_SOLTU	3E-135	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400032789}
TAIR10	AT5G64120.1	2E-85	Peroxidase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	24123780	24126712	+
GWHAAZE00000005	mRNA	24123780	24126712	+
GWHAAZE00000005	exon	24123780	24124181	+
GWHAAZE00000005	exon	24125632	24125794	+
GWHAAZE00000005	exon	24126399	24126712	+
GWHAAZE00000005	CDS	24123780	24124181	+
GWHAAZE00000005	CDS	24125632	24125794	+
GWHAAZE00000005	CDS	24126399	24126712	+

Transcript Sequence
>GWHTAAZE018794 ATGAGGTTTAATTTCTTCAACCAAACACCCATTTTGGTGTTCCTTTTGCTAGCCACTTTCACCACCTTATCACTAGCCCAAGGCACAAGAGTAGGCTTCTATTCGCGTACTTGCCCTCGAGTAGAGTCCATTGTTCAAGCCACTGTTAGGAGACATTTTGGCTCTGATCCCACGATTGCCCCCGGCTTGCTTAGGATGATCTTCCATGATTGCTTTGTCCAAGGTTGCGACGCGTCTATACTCATTGACGGCGCTTCTACCGAGAAAACTGCCGGCCCTAACCTCCTGTTGAGAGGGTACGAGGTTATCGATGATGCTAAGACCCAGCTTGAAGCTGCGTGCCCTGGTGTCGTCTCCTGTGCTGATATCCTTGCTATTGCTGCTCGTGATTCAGTCGTTGTGACAGGTGGATTACCATGGGCAGTGCCTACAGGGAGAAGAGATGGGAGGGTATCAGTGGCATCTGAAGCTTTAAACTTGCCAGGTTTCACCGACTCTGTTGACCTTCAAAGGCAAAAGTTTCAAGCTAAAGGTCTTTCCCCTCAAGATCTTGTCGCTCTTGTCGGAGCACACACAATTGGAACATCAGCTTGCCAATTCTTCAGCTACAGATTATACAACTTCAACTCCACCGGAGCTGCAGACCCCTCAATCGACCCGACATTTCTCCCTCAACTCCGGGCACTTTGTCCACAGAATGGCGATGCCTCAAGGCGAGTGGGACTAGACAGTGGCAGTGAAAACAGATTCGAGCCATTGTACTATGCAAAATTAGGGATGGCCGAGGAATATTGGAGTCGGACCAAAAATTATGGACCGATGCGTCGACGAGAGTACTTGTGCAACGTTTTTTGGGCATTAGGGGATTGGCTGGACTGA

Network for GWHGAAZE018772

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00141.24	peroxidase	45	258	4.30E-64

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00430	E1.11.1.7	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Phenylpropanoid biosynthesis	map00940

Gene Ontology

GO term	Ontology	Name
GO:0006979	biological_process	response to oxidative stress
GO:0055114	biological_process	oxidation-reduction process
GO:0042744	biological_process	hydrogen peroxide catabolic process
GO:0004601	molecular_function	peroxidase activity
GO:0020037	molecular_function	heme binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	9.467
	SRR3591706	second leaf	6.344
	SRR3591707	mature leaf	2.342
	SRR3591708	Shoot apex	2.946
	SRR3591709	Stem	15.266
	SRR3591710	White floral bud	14.660
	SRR3591711	White flower	4.318
	SRR3591712	Green floral bud	18.231
	SRR3591713	Yellow flower	6.660
SRP173429	SRR8316895	Juvenile bud stage	2.935
	SRR8316896	Juvenile bud stage	12.831
	SRR8316897	Juvenile bud stage	4.166
	SRR8316894	Third green stage	9.580
	SRR8316900	Third green stage	7.626
	SRR8316901	Third green stage	15.711
	SRR8316898	Complete white stage	17.484
	SRR8316899	Complete white stage	31.163
	SRR8316903	Complete white stage	16.596
	SRR8316902	Silver flowering stage	34.258
	SRR8316904	Silver flowering stage	31.975
	SRR8316905	Silver flowering stage	13.517
	SRR8316906	Gold flowering stage	78.528
	SRR8316907	Gold flowering stage	58.553
	SRR8316908	Gold flowering stage	89.895
SRP132670	SRR6706286	Control	21.426
	SRR6706287	Light intensity 50%	21.519
	SRR6706288	Light intensity 20%	13.947
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.227
	CNS0095593	Slightly white alabastrum(diploid) 2	10.622
	CNS0095594	Slightly white alabastrum(diploid) 3	6.771
	CNS0095595	Whole white alabastrum(diploid) 2	2.086
	CNS0095596	Whole white alabastrum(diploid) 3	0.464
	CNS0095597	Whole white alabastrum(diploid) 4	1.655
	CNS0095598	Silvery flower (diploied) 1	0.842
	CNS0095599	Silvery flower (diploied) 2	0.995
	CNS0095600	Silvery flower (diploied) 3	17.368
	CNS0095601	Golden flower (diploid) 1	1.487
	CNS0095602	Golden flower (diploid) 2	3.922
	CNS0095603	Golden flower (diploid) 3	4.797
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.581
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.199
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.911
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.763
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.770
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.128
	CNS0095610	Silvery flower (diploied) 1	4.903
	CNS0095611	Silvery flower (diploied) 2	0.181
	CNS0095612	Silvery flower (diploied) 3	4.145
	CNS0095613	Golden flower (tetraploid) 1	15.990
	CNS0095614	Golden flower (tetraploid) 2	10.944
	CNS0095615	Golden flower (tetraploid) 3	0.247
CRA001975	CRR073297	Stem 1	8.530
	CRR073298	Stem 2	6.251
	CRR073299	Stem 3	5.587
	CRR073300	Leaf 1	16.126
	CRR073301	Leaf 2	16.986
	CRR073302	Leaf 3	11.066
	CRR073303	Juvenile bud 1	6.540
	CRR073304	Juvenile bud 2	5.148
	CRR073305	Juvenile bud 3	10.563
	CRR073306	Third green 1	6.366
	CRR073307	Third green 2	3.693
	CRR073308	Third green 3	4.288
	CRR073309	Second white 1	3.500
	CRR073310	Second white 2	3.457
	CRR073311	Second white 3	3.874
	CRR073312	Silver flowering 1	29.574
	CRR073313	Silver flowering 2	20.855
	CRR073314	Silver flowering 3	11.799
	CRR073315	Gold flowering 1	2.069
	CRR073316	Gold flowering 2	10.270
	CRR073317	Gold flowering 3	4.719
	CRR073318	Tawny withering 1	20.045
	CRR073319	Tawny withering 2	16.989
	CRR073320	Tawny withering 3	26.584