Gene detail

Detail information of GWHGAAZE018809

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010657835.1	0	PREDICTED: mitogen-activated protein kinase kinase kinase 1-like [Vitis vinifera]
Swissprot	tr\|Q39008\|M3K1_ARATH	2E-119	Mitogen-activated protein kinase kinase kinase 1
trEMBL	tr\|A0A067K9I5\|A0A067K9I5_JATCU	0	Uncharacterized protein {ECO:0000313\|EMBL:KDP32742.1}
TAIR10	AT4G08500.1	2E-100	MAPK/ERK kinase kinase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	24678490	24689214	+
GWHAAZE00000005	mRNA	24678490	24689214	+
GWHAAZE00000005	exon	24678490	24678922	+
GWHAAZE00000005	exon	24679043	24679137	+
GWHAAZE00000005	exon	24679221	24679516	+
GWHAAZE00000005	exon	24682221	24682305	+
GWHAAZE00000005	exon	24682429	24682491	+
GWHAAZE00000005	exon	24683542	24683699	+
GWHAAZE00000005	exon	24685501	24685531	+
GWHAAZE00000005	exon	24685678	24685737	+
GWHAAZE00000005	exon	24688488	24688598	+
GWHAAZE00000005	exon	24689014	24689214	+
GWHAAZE00000005	CDS	24678490	24678922	+
GWHAAZE00000005	CDS	24679043	24679137	+
GWHAAZE00000005	CDS	24679221	24679516	+
GWHAAZE00000005	CDS	24682221	24682305	+
GWHAAZE00000005	CDS	24682429	24682491	+
GWHAAZE00000005	CDS	24683542	24683699	+
GWHAAZE00000005	CDS	24685501	24685531	+
GWHAAZE00000005	CDS	24685678	24685737	+
GWHAAZE00000005	CDS	24688488	24688598	+
GWHAAZE00000005	CDS	24689014	24689214	+

Transcript Sequence
>GWHTAAZE018831 ATGAACACGAAGCAAAAGAGGCAAAGGCCGAGGCTAGATCGAAGAAACGCAATCAAGAACATCGACTACGACGCTTCATTATCATCAACGTCATCCTCTTCGTCGTCGTTCGATGATCACTCCAAGCACAGAACTCGTTCGCTCGATCTATATCCAGTCCCAGATCTGGGAAGCTTCAGAATTGAGGGATTAGACGGCGAGTTTGACCGAATTTGCCGCTCTTTAGGACTTTCCGGCCCTGAAGATTTTGCAATTCCGGCTGCTGCCTGGGAGGCTCGAAAGGTTAGGTCTCCTTCTGATCATCTCCCTACCTCTAGGTTTAAGGATCACTACAATTCTCCTAGAGAATCGGCTGATTTGTCGGATAATTTTGGAGCCAGGGTTAGGGGTTGTGATGAGGTTGAACAGGGAGATAAGTGTTGTGAGTTGAAGAATGAAGGCACTGCTCCTTTGAATACTTTTGTGAATTCGGTTAGGGTAAGACGTTCTAGGGACGGGGAATCTGGAATTAAGGGTGTTCGACCACCGAATGGAGGGCCTGTTAAGCATTTGGATGTAGTTGAAGAAGATGAGGATGTAGATGGTGGAAATGTTGGGAGGCGAGAGCCGAATGAGGAGAGGTTGAGTAATACTGCTGTTCTATCAGAATCTTGTTCAGATTCATCGAATGACGATAAAGATGACGAGCCTTGTAATAGCTCAACCACGGAACATGAGTATTCTATTTCGCCTAATGGACTGTTCAACCGGAATATAATGTCTTGGCAGAAGGGAGACTTTCTAGGAAGTGGGTCGTTTGGAACAGTGTATGAAGGCTTTACAGACGACGGATTTTTTTTTGCTGTAAAGGAGGTTTCTTTGCTTGATCAAGGAAGCCAGGGAAAGCAAAGCATTTATCAACTTGAACAGGAGATTTCTCTTTTAAGCCAGTTCAAACACGAGAACATAGTTCAATATTTGGGAACAGATACGGATGATGGCAAACTCTATATCTTCCTTGAGCTTGTAACAAAAGGTTCGCTGGCAAATCTTTATCAGAAGTATAACCTGCGAGATTCCCAAGTCTCTGTATACACCAGGCAGATTTTGAGTGGTTTGAGTTATCTTCATGGCCGAAATGTGGTTCACAGGGATATCAAATGTGCCAACATATTGGTGGATGCAACCACATTGAATGATGTAAAATCCTGCAAAGGGACTGCATTCTGGATGGCCCCCGAGGTTGTTAACCGGAAAAGCCGTGGCTATGGGCTTGCTGCTGATATATGGAGCCTTGGATGCACAGTGTTAGAGATGTTAACTGGACAAGTTCCATATTCTCACTTGGAAGGGATGCAAGCATTATTTAGGATTGGCAGGGGTGAACCTCCGCCCATCCCTAATTCTTTATCAAAAGATGCCCAAGATTTTATCCTCAAGTGCTTGCAAGTGAACCCTGATAATCGGCCTACTGCTGTTGAACTATTGGACCATCCATTTGTGAGGAGAACATCATTAACTTTCTCATCTCCCGGCCATTCTGGCTCGCGGTAA

Network for GWHGAAZE018809

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	256	494	5.30E-56

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	STE_STE11

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	33.942
	SRR3591706	second leaf	19.437
	SRR3591707	mature leaf	32.368
	SRR3591708	Shoot apex	26.408
	SRR3591709	Stem	34.855
	SRR3591710	White floral bud	31.513
	SRR3591711	White flower	30.848
	SRR3591712	Green floral bud	23.065
	SRR3591713	Yellow flower	37.391
SRP173429	SRR8316895	Juvenile bud stage	10.937
	SRR8316896	Juvenile bud stage	16.501
	SRR8316897	Juvenile bud stage	5.709
	SRR8316894	Third green stage	8.054
	SRR8316900	Third green stage	16.879
	SRR8316901	Third green stage	17.435
	SRR8316898	Complete white stage	11.335
	SRR8316899	Complete white stage	28.711
	SRR8316903	Complete white stage	19.917
	SRR8316902	Silver flowering stage	10.950
	SRR8316904	Silver flowering stage	16.676
	SRR8316905	Silver flowering stage	9.182
	SRR8316906	Gold flowering stage	27.511
	SRR8316907	Gold flowering stage	28.112
	SRR8316908	Gold flowering stage	26.306
SRP132670	SRR6706286	Control	16.071
	SRR6706287	Light intensity 50%	16.860
	SRR6706288	Light intensity 20%	17.383
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	10.638
	CNS0095593	Slightly white alabastrum(diploid) 2	12.061
	CNS0095594	Slightly white alabastrum(diploid) 3	8.993
	CNS0095595	Whole white alabastrum(diploid) 2	10.360
	CNS0095596	Whole white alabastrum(diploid) 3	8.829
	CNS0095597	Whole white alabastrum(diploid) 4	11.583
	CNS0095598	Silvery flower (diploied) 1	18.010
	CNS0095599	Silvery flower (diploied) 2	14.756
	CNS0095600	Silvery flower (diploied) 3	24.592
	CNS0095601	Golden flower (diploid) 1	16.794
	CNS0095602	Golden flower (diploid) 2	24.725
	CNS0095603	Golden flower (diploid) 3	24.359
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.087
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.684
	CNS0095606	Slightly white alabastrum(tetraploid) 3	17.467
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.029
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.836
	CNS0095609	Whole white alabastrum(tetraploid) 3	10.580
	CNS0095610	Silvery flower (diploied) 1	19.905
	CNS0095611	Silvery flower (diploied) 2	17.721
	CNS0095612	Silvery flower (diploied) 3	16.037
	CNS0095613	Golden flower (tetraploid) 1	14.305
	CNS0095614	Golden flower (tetraploid) 2	19.103
	CNS0095615	Golden flower (tetraploid) 3	27.895
CRA001975	CRR073297	Stem 1	22.758
	CRR073298	Stem 2	24.210
	CRR073299	Stem 3	16.856
	CRR073300	Leaf 1	25.577
	CRR073301	Leaf 2	22.625
	CRR073302	Leaf 3	17.837
	CRR073303	Juvenile bud 1	19.205
	CRR073304	Juvenile bud 2	14.197
	CRR073305	Juvenile bud 3	19.384
	CRR073306	Third green 1	16.784
	CRR073307	Third green 2	13.101
	CRR073308	Third green 3	16.369
	CRR073309	Second white 1	10.612
	CRR073310	Second white 2	19.857
	CRR073311	Second white 3	20.254
	CRR073312	Silver flowering 1	15.971
	CRR073313	Silver flowering 2	11.714
	CRR073314	Silver flowering 3	12.988
	CRR073315	Gold flowering 1	8.026
	CRR073316	Gold flowering 2	16.295
	CRR073317	Gold flowering 3	7.626
	CRR073318	Tawny withering 1	21.408
	CRR073319	Tawny withering 2	14.063
	CRR073320	Tawny withering 3	18.131