Gene detail

Detail information of GWHGAAZE018843

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_011087728.1	PREDICTED: serine hydroxymethyltransferase 6-like [Sesamum indicum]
Swissprot	tr\|Q84WV0\|GLYC7_ARATH	Serine hydroxymethyltransferase 7
trEMBL	tr\|M1C756\|M1C756_SOLTU	Serine hydroxymethyltransferase {ECO:0000256\|RuleBase:RU000585}
TAIR10	AT1G36370.1	serine hydroxymethyltransferase 7

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	25396191	25401986	+
GWHAAZE00000005	mRNA	25396191	25401986	+
GWHAAZE00000005	exon	25396191	25397213	+
GWHAAZE00000005	exon	25397477	25397507	+
GWHAAZE00000005	exon	25398355	25398506	+
GWHAAZE00000005	exon	25401342	25401564	+
GWHAAZE00000005	exon	25401684	25401986	+
GWHAAZE00000005	CDS	25396191	25397213	+
GWHAAZE00000005	CDS	25397477	25397507	+
GWHAAZE00000005	CDS	25398355	25398506	+
GWHAAZE00000005	CDS	25401342	25401564	+
GWHAAZE00000005	CDS	25401684	25401907	+
GWHAAZE00000005	three_prime_UTR	25401908	25401986	+

Transcript Sequence
>GWHTAAZE018865 ATGGATTTGACGCACTCGCAGTCGAATTTCTCCTCCCTAGGGTTTTCGTCTCATCGGACCCCAGTTGCCGATAACTTGATCGATTTCCAGATTGATTGCAGTGGCCGTGATGCTTCTACGTGCTCGGTTCCGCCGATTCCGCTGCAACTGATGGAGCCACAGACTGAGAATTCTTCCAATGAGGAGGGAGAGCGTGGAGGTGAGGAGAGAGAACTCCAGGAGTTTAGGATTTTGGGGCATTCTATGTGTTTGAAGAGGCCAAGGGATAGGGGTAGTGATTCCTGTTCTCCATCCCCAACGACAAATAAACGGGGTCCAGTCGAGCCACAGGACCTCGAATCGCGGCGAAATGCAGTTAGGGCGTGGGGTAATCAATCACTCAGTGTTGCTGATCCAGATGTTTTTACCATTATGGAGAAGGAGAAGCAGAGGCAGTATAAAGGCATTGAGTTGATAGCTTCGGAGAATTTCGTTTGCCAGGCAGTAATGGAAGCTCTGGGTAGCCATTTGACTAACAAGTACTCGGAAGGAATGCCTGGTTCTAGGTATTATGGAGGTAATCAGCACATTGATGAGATTGAATTGCTCTGTGGTAATCGTGCTCTAGCTGCTTTCGGTCTTGATTCGGAGAATTGGGGTGTAAATGTTCAACCTTATTCTTGTACATCAGCCAATTTTGCAGTTTACACTGGTTTGCTATTGCCAGGCGATAGAATAATGGGATTGGATACACCTTCTGGAGGAAACACTAGTCATGGTTACTATACACCAAATGGAAGGAAAGTTTCTGGGGCTTCAATTTTCTTTGAAAGTCTTCCATATAAGGTGAACCCACAAACCGGGTATATAGACTATGATAAGCTTGAAGAGAGGGCACTTGATTTTCGCCCCAAGATACTTATTTGTGGTGGGAGCTCTTATCCTCGAGAGTGGGATTATGCTAAGTTTAGACAAATTGCAGATAGGTGCGGAGCGGTGTTGATGTCTGACATGGCTCAAATAAGCGGTCTTGTTGCTGCCAAGGAGATTGCTGTAGGTTCGAGGCAGTGTCTTGGTGATGGCAGTGACAGATATGACTTTGAGGAGAAGATAAACTTTGCCGTTTTTCCAGCACTGCAAGGTGGTCCACACAATAATCACATTGCTGCTCTTGCAGTAGCCTTGAAACAATTGGCCACCCCTGAGTACAAGACGTACATGCAGCAGCCTGTTAACTTGCAACACCATGTCCTTGCCATTTATGAGGCTGATGTAGGTGTTACAGTTCATTATGTGGGATACTCGTACAACAGAATGTGTTCTTATTTCTCTGATCTTGTATTTGTAGGTAAGAATTTCGAGGTGGTCTGTGAGATGTGTCACATAACTCTCAACAAAATTGCGATATTTGACGACAATGGCGCTATTACCCCTGGAGGCGTAAGGATTGGTACTCCTGCCATGACATCAAGAGGTTGTCTAGAGTCTGATTTCGAGGCAATAGCTGACTTTCTACTCAGAGCAGCACAAATAGCGAGTATGGTGCAGAGGGAGCACGGCAAGGTGCCCAAAGGTTTCTTAAAGGGTGTTCAGAACAACAAAGAAATTGAGGAACTCCGGGTTCGGGTTGAAAATTTTGCGACTCAATTTGCAATGCCAGGGCTCGACGTGTAAATATCACTTGTTACGCGGACACTTGTGCCCCCTTTACCGTTCATGTTAATGATGCAGATTTGCATTCAGTTATTTATTT

Network for GWHGAAZE018843

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00464.20	SHMT	128	344	8.30E-94
PF00464.20	SHMT	354	497	5.30E-33

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00600	glyA, SHMT	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Biosynthesis of amino acids	map01230
		Glyoxylate and dicarboxylate metabolism	map00630
		Methane metabolism	map00680
		Glycine, serine and threonine metabolism	map00260
		Cyanoamino acid metabolism	map00460
		One carbon pool by folate	map00670

Gene Ontology

GO term	Ontology	Name
GO:0019264	biological_process	glycine biosynthetic process from serine
GO:0035999	biological_process	tetrahydrofolate interconversion
GO:0003824	molecular_function	catalytic activity
GO:0004372	molecular_function	glycine hydroxymethyltransferase activity
GO:0030170	molecular_function	pyridoxal phosphate binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	19.179
	SRR3591706	second leaf	16.441
	SRR3591707	mature leaf	17.786
	SRR3591708	Shoot apex	17.236
	SRR3591709	Stem	16.434
	SRR3591710	White floral bud	20.584
	SRR3591711	White flower	24.985
	SRR3591712	Green floral bud	22.935
	SRR3591713	Yellow flower	19.649
SRP173429	SRR8316895	Juvenile bud stage	10.933
	SRR8316896	Juvenile bud stage	17.498
	SRR8316897	Juvenile bud stage	7.869
	SRR8316894	Third green stage	7.365
	SRR8316900	Third green stage	20.970
	SRR8316901	Third green stage	20.975
	SRR8316898	Complete white stage	7.047
	SRR8316899	Complete white stage	23.887
	SRR8316903	Complete white stage	13.032
	SRR8316902	Silver flowering stage	9.181
	SRR8316904	Silver flowering stage	13.122
	SRR8316905	Silver flowering stage	5.238
	SRR8316906	Gold flowering stage	20.081
	SRR8316907	Gold flowering stage	19.047
	SRR8316908	Gold flowering stage	19.246
SRP132670	SRR6706286	Control	14.846
	SRR6706287	Light intensity 50%	16.574
	SRR6706288	Light intensity 20%	18.562
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	16.035
	CNS0095593	Slightly white alabastrum(diploid) 2	15.979
	CNS0095594	Slightly white alabastrum(diploid) 3	14.315
	CNS0095595	Whole white alabastrum(diploid) 2	15.940
	CNS0095596	Whole white alabastrum(diploid) 3	16.452
	CNS0095597	Whole white alabastrum(diploid) 4	14.583
	CNS0095598	Silvery flower (diploied) 1	15.380
	CNS0095599	Silvery flower (diploied) 2	10.758
	CNS0095600	Silvery flower (diploied) 3	20.136
	CNS0095601	Golden flower (diploid) 1	10.761
	CNS0095602	Golden flower (diploid) 2	21.684
	CNS0095603	Golden flower (diploid) 3	18.263
	CNS0095604	Slightly white alabastrum(tetraploid) 1	20.927
	CNS0095605	Slightly white alabastrum(tetraploid) 2	19.320
	CNS0095606	Slightly white alabastrum(tetraploid) 3	24.124
	CNS0095607	Whole white alabastrum(tetraploid) 1	16.777
	CNS0095608	Whole white alabastrum(tetraploid) 2	11.204
	CNS0095609	Whole white alabastrum(tetraploid) 3	18.597
	CNS0095610	Silvery flower (diploied) 1	21.909
	CNS0095611	Silvery flower (diploied) 2	19.426
	CNS0095612	Silvery flower (diploied) 3	17.893
	CNS0095613	Golden flower (tetraploid) 1	13.436
	CNS0095614	Golden flower (tetraploid) 2	22.169
	CNS0095615	Golden flower (tetraploid) 3	20.221
CRA001975	CRR073297	Stem 1	17.564
	CRR073298	Stem 2	15.586
	CRR073299	Stem 3	13.933
	CRR073300	Leaf 1	17.831
	CRR073301	Leaf 2	18.708
	CRR073302	Leaf 3	13.713
	CRR073303	Juvenile bud 1	17.459
	CRR073304	Juvenile bud 2	12.666
	CRR073305	Juvenile bud 3	21.192
	CRR073306	Third green 1	14.455
	CRR073307	Third green 2	10.884
	CRR073308	Third green 3	11.067
	CRR073309	Second white 1	13.593
	CRR073310	Second white 2	7.703
	CRR073311	Second white 3	11.826
	CRR073312	Silver flowering 1	10.020
	CRR073313	Silver flowering 2	13.476
	CRR073314	Silver flowering 3	10.994
	CRR073315	Gold flowering 1	6.458
	CRR073316	Gold flowering 2	9.737
	CRR073317	Gold flowering 3	9.134
	CRR073318	Tawny withering 1	15.100
	CRR073319	Tawny withering 2	11.887
	CRR073320	Tawny withering 3	11.509