Gene detail

Detail information of GWHGAAZE018909

Functional Annotation

Database	Orthologs	Annotation
Nr	KHG13928.1	Phosphoribosylamine--glycine ligase, chloroplastic -like protein [Gossypium arboreum]
Swissprot	tr\|P52420\|PUR2_ARATH	Phosphoribosylamine--glycine ligase, chloroplastic (Precursor)
trEMBL	tr\|M1CBL9\|M1CBL9_SOLTU	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400064030}
TAIR10	AT1G09830.1	Glycinamide ribonucleotide (GAR) synthetase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	26723756	26728549	-
GWHAAZE00000005	mRNA	26723756	26728549	-
GWHAAZE00000005	exon	26723756	26724172	-
GWHAAZE00000005	exon	26725175	26725705	-
GWHAAZE00000005	exon	26726681	26727060	-
GWHAAZE00000005	exon	26728306	26728549	-
GWHAAZE00000005	CDS	26728306	26728549	-
GWHAAZE00000005	CDS	26726681	26727060	-
GWHAAZE00000005	CDS	26725175	26725705	-
GWHAAZE00000005	CDS	26723756	26724172	-

Transcript Sequence
>GWHTAAZE018931 ATGGCTTGCATTTCATACAACACCGGAGCTCCTACAAATTTCCAGGAGCAGTGTCACCAACGTTCAGCCAAGCCGTTCGTATCAACTCACCGCCGGTGTGGATTTGGAAAATTTTCATCTCTCTTCAACGTGCAACCACTCAATTGGGACTCTGAGAACGTTCATTGTCCTCGGGATTCTCTACGTGTCTGCAGCTCTCGATCATCTGCTGTCTTCAACAGTCCTTCATCTAACAGCGTTACTGAAGAGAGTGTCACAGTTTTGGTCATTGGTGGAGGGGGAAGGGAACATGCACTTTGTTATGCCTTGAACCGATCCCCTTCATGCTCTGCTGTATTTTGTGCGCCTGGCAATGATGGGATTTCCAACTCAGGGGACGCCACTTGTATTTCAGAGTCAGACCTTGATATTTCTGATAGCTCGGCTGTGATATCCTTTTGCCGCAAATGGAGAGTGGGACTGGTTGTGATCGGTCCAGAGGCTCCTCTTGTTGCGGGTCTTGCAAACGATCTTGTTAAGGCCGGGATTCTTGCTTTTGGCCCTTCATCAGATGCTGCTGCTTTGGAAGGTTCCAAGAGCTTCATGAAGAATTTGTGTGACAAATATGGGATCCCGACTGCAAAGTATCAAACATTTACAGACCCATCTGCTGCAAAGGCTTATATTAAAGAGCAAGGGGCACCCATTGTCATAAAAGCAGATGGATTAGCTGCTGGAAAAGGGGTTATTGTCGCTACAACCCTAGAAGAAGCTTACGAAGCCGTTGACTCGATGCTTGTAAAGAGCGTTTTCGGCTCTGCTGGTTGTCGAGTCATCGTTGAGGAATTTCTAGAAGGAGAAGAGGCCTCGTTCTTCGCGCTAGTGGACGGGGAGAATGCAATACCTTTAGAATCGGCTCAGGATCATAAACGAGTTGGGGATGGTGACACAGGACCCAATACTGGTGGAATGGGAGCATACTCACCCGCTCCTGTGTTGACCAAAGAACTTGAGTCTTTGGTGATGGAATCGATAATTATGCCTACGGTGAGAGGGATGGCTGAAGAGGGATGCAAGTTTGTTGGGGTTCTTTATGCTGGGCTTATGATCGAGAAGAAGTCAGGATTACCCAAGTTAATCGAGTACAATGTGCGATTCGGAGATCCTGAGTGCCAGGTTCTAATGGTGCGACTGGAGTCTGATCTTGTGCAAGTTCTACTCGCAGCTTGTAAGGGAGAGCTAAAGGATCTAACACTAAATTGGTCCCCCGGTTCAGCCATGGTAGTGGTCATGGCTAGCAATGGCTACCCGGGGAGCTACAAAAAGGGCACCATTATTAGGAACCTCGATGAAGCTGAGGTTGTTGCTCCATCCGTTAAGATATTCCACGCTGGAACCGCTCTCGACTTAAATGGCAACTTTATTGCCACGGGTGGACGCGTTCTTGGCGTCACTGCCAAAGGTAAAGACCTCGAAGAGGCTTGCGATAGAGCTTACCTAGCCGTTGATGAAATCAAGTGGCCCGGAGGGTTTTACAGGCGAGACATTGGTTGGCGTGCGCTTCCCCGGAAACAAGTTTCCTTCAAAGGATGA

Network for GWHGAAZE018909

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02844.16	GARS_N	86	189	8.50E-29
PF01071.20	GARS_A	190	384	2.00E-84
PF02843.17	GARS_C	419	512	2.40E-28

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01945	purD	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Purine metabolism	map00230

Gene Ontology

GO term	Ontology	Name
GO:0009113	biological_process	purine nucleobase biosynthetic process
GO:0004637	molecular_function	phosphoribosylamine-glycine ligase activity
GO:0005524	molecular_function	ATP binding
GO:0046872	molecular_function	metal ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.180
	SRR3591706	second leaf	4.606
	SRR3591707	mature leaf	4.780
	SRR3591708	Shoot apex	9.579
	SRR3591709	Stem	4.644
	SRR3591710	White floral bud	6.021
	SRR3591711	White flower	12.597
	SRR3591712	Green floral bud	11.730
	SRR3591713	Yellow flower	10.732
SRP173429	SRR8316895	Juvenile bud stage	6.606
	SRR8316896	Juvenile bud stage	9.163
	SRR8316897	Juvenile bud stage	4.690
	SRR8316894	Third green stage	3.554
	SRR8316900	Third green stage	12.547
	SRR8316901	Third green stage	9.648
	SRR8316898	Complete white stage	2.367
	SRR8316899	Complete white stage	10.932
	SRR8316903	Complete white stage	2.841
	SRR8316902	Silver flowering stage	2.747
	SRR8316904	Silver flowering stage	3.937
	SRR8316905	Silver flowering stage	2.070
	SRR8316906	Gold flowering stage	8.512
	SRR8316907	Gold flowering stage	7.574
	SRR8316908	Gold flowering stage	8.637
SRP132670	SRR6706286	Control	11.802
	SRR6706287	Light intensity 50%	10.196
	SRR6706288	Light intensity 20%	12.114
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.159
	CNS0095593	Slightly white alabastrum(diploid) 2	9.387
	CNS0095594	Slightly white alabastrum(diploid) 3	5.306
	CNS0095595	Whole white alabastrum(diploid) 2	5.723
	CNS0095596	Whole white alabastrum(diploid) 3	6.435
	CNS0095597	Whole white alabastrum(diploid) 4	5.053
	CNS0095598	Silvery flower (diploied) 1	7.207
	CNS0095599	Silvery flower (diploied) 2	6.231
	CNS0095600	Silvery flower (diploied) 3	9.171
	CNS0095601	Golden flower (diploid) 1	5.371
	CNS0095602	Golden flower (diploid) 2	9.032
	CNS0095603	Golden flower (diploid) 3	7.955
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.447
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.925
	CNS0095606	Slightly white alabastrum(tetraploid) 3	16.282
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.473
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.888
	CNS0095609	Whole white alabastrum(tetraploid) 3	12.641
	CNS0095610	Silvery flower (diploied) 1	13.033
	CNS0095611	Silvery flower (diploied) 2	12.979
	CNS0095612	Silvery flower (diploied) 3	7.757
	CNS0095613	Golden flower (tetraploid) 1	6.803
	CNS0095614	Golden flower (tetraploid) 2	9.825
	CNS0095615	Golden flower (tetraploid) 3	9.217
CRA001975	CRR073297	Stem 1	11.375
	CRR073298	Stem 2	10.274
	CRR073299	Stem 3	11.907
	CRR073300	Leaf 1	12.227
	CRR073301	Leaf 2	9.648
	CRR073302	Leaf 3	10.884
	CRR073303	Juvenile bud 1	11.797
	CRR073304	Juvenile bud 2	8.291
	CRR073305	Juvenile bud 3	9.775
	CRR073306	Third green 1	2.139
	CRR073307	Third green 2	1.500
	CRR073308	Third green 3	1.667
	CRR073309	Second white 1	5.980
	CRR073310	Second white 2	4.807
	CRR073311	Second white 3	4.777
	CRR073312	Silver flowering 1	4.300
	CRR073313	Silver flowering 2	5.889
	CRR073314	Silver flowering 3	3.875
	CRR073315	Gold flowering 1	7.768
	CRR073316	Gold flowering 2	10.688
	CRR073317	Gold flowering 3	9.119
	CRR073318	Tawny withering 1	7.236
	CRR073319	Tawny withering 2	5.477
	CRR073320	Tawny withering 3	7.592