Gene detail

Detail information of GWHGAAZE018948

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008361679.1	2.8331E-115	PREDICTED: uncharacterized protein At5g08430-like isoform X2 [Malus domestica]
Swissprot	tr\|Q9FT92\|Y5843_ARATH	9E-71	Uncharacterized protein At5g08430
trEMBL	tr\|M5XJ72\|M5XJ72_PRUPE	5E-113	Uncharacterized protein {ECO:0000313\|EMBL:EMJ26132.1}
TAIR10	AT5G08430.1	2E-49	SWIB/MDM2 domain;Plus-3;GYF

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	27613374	27616257	+
GWHAAZE00000005	mRNA	27613374	27616257	+
GWHAAZE00000005	exon	27613374	27613379	+
GWHAAZE00000005	exon	27613763	27614642	+
GWHAAZE00000005	exon	27615866	27615960	+
GWHAAZE00000005	exon	27616138	27616257	+
GWHAAZE00000005	CDS	27613374	27613379	+
GWHAAZE00000005	CDS	27613763	27614642	+
GWHAAZE00000005	CDS	27615866	27615960	+
GWHAAZE00000005	CDS	27616138	27616257	+

Transcript Sequence
>GWHTAAZE018970 ATGAAGGGAAAAGTGGACTTTAAAGATTGGGAAACATACGAGGGTCTGTTCATGGAATATTGGGCATCAATCAACGAGAAAGAAGGGTTGACTGTGAAAAACCTCCAATCGGCAAAGGTGCGATTGAAGACGGGAAATAACTACAAATCTGACTCTGATTCGAACAAAGCAGACTCAAGTGAGGAAGATCAGCTGATATCCGATAGTGACAACATGGATTACATAGAAGAGCAGAAGCCAGAGCGTAAAAGAAAAAAGAGGTCCTTTGGGCAGTCATCTCCGGGGAAAAGAAAGTATAAATCGAATAAACAGGAGTTCATTGGTTGGGGATCAAAATCTCTTATAAAATTTATTTCATCAATAGGTAAAGATACAAGCAGAAAATTGTCACAACACGATGTGACTTCTATCATAAATGGATATATTAAGGAAAACAATCTCTTCCACCCTGAGAAAAAGAAACAGGTTGTATGTGATGCAAGGCTGCAGTCTGTTTTGGGGAGGAAAATAGTGAACAAACATAGAATATTCAATCTCCTAGAAACCCACTTTGCTGAGAACTTGGATTCTTCTTCTGAGGAAGATGTTGGTTACAATTCAGAAGAAATGGATGCTGATACTTTAGTAGCCTGTAAAAGGCAGAGAAAATTGAGTACAGATATAGTATCCCAGAAGAAGGAGGTGGTGTTAAATATTCCTGAAAATTGTTTAGCGTCCCTTGTTACTGAAAACATTAAGCTCATCTACTTGAAGAGGAGTTTAGTGGTGGAGCTATTACAGCAACCTGAGACCTTTGATAGCAAGGTACTTGGAAGCTTTGTGAGAGTGAAATCAGATCCTAACGATTTCTTTCAAAAAAACCCATATCAGCTCGTGCAAGTTACAGGCATAAAGAAGAGTTCAGCTGGTGAATACCTGCAAGTTTCACTTATGCTTAAAGATATCCATATCAGTTCGCTGTCAGATGATGACTTCTCTGAGGAAGAATGCGAGGATCTGAGACTGAAAGTAAAACTTGGCCTGCTTAAAAAGATCACTGTAGTAAGTACTCTCGAGGTTAAAATTCAAGGTTGTCTTGACGATCAAATAATGGTGATCTAA

Network for GWHGAAZE018948

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02201.19	SWIB	117	184	2.90E-13
PF03126.19	Plus-3	244	336	8.30E-14

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	SWI/SNF-BAF60b

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.016
	SRR3591706	second leaf	1.727
	SRR3591707	mature leaf	0.226
	SRR3591708	Shoot apex	5.065
	SRR3591709	Stem	2.539
	SRR3591710	White floral bud	1.396
	SRR3591711	White flower	0.827
	SRR3591712	Green floral bud	1.921
	SRR3591713	Yellow flower	0.331
SRP173429	SRR8316895	Juvenile bud stage	2.401
	SRR8316896	Juvenile bud stage	2.314
	SRR8316897	Juvenile bud stage	1.328
	SRR8316894	Third green stage	0.879
	SRR8316900	Third green stage	1.980
	SRR8316901	Third green stage	2.188
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	1.182
	SRR8316903	Complete white stage	0.356
	SRR8316902	Silver flowering stage	0.167
	SRR8316904	Silver flowering stage	0.285
	SRR8316905	Silver flowering stage	0.062
	SRR8316906	Gold flowering stage	0.648
	SRR8316907	Gold flowering stage	0.089
	SRR8316908	Gold flowering stage	0.127
SRP132670	SRR6706286	Control	0.047
	SRR6706287	Light intensity 50%	0.157
	SRR6706288	Light intensity 20%	0.124
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.953
	CNS0095593	Slightly white alabastrum(diploid) 2	1.558
	CNS0095594	Slightly white alabastrum(diploid) 3	2.421
	CNS0095595	Whole white alabastrum(diploid) 2	1.324
	CNS0095596	Whole white alabastrum(diploid) 3	0.584
	CNS0095597	Whole white alabastrum(diploid) 4	0.702
	CNS0095598	Silvery flower (diploied) 1	1.321
	CNS0095599	Silvery flower (diploied) 2	0.735
	CNS0095600	Silvery flower (diploied) 3	0.523
	CNS0095601	Golden flower (diploid) 1	0.627
	CNS0095602	Golden flower (diploid) 2	0.746
	CNS0095603	Golden flower (diploid) 3	0.669
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.286
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.786
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.632
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.062
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.854
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.254
	CNS0095610	Silvery flower (diploied) 1	0.851
	CNS0095611	Silvery flower (diploied) 2	0.456
	CNS0095612	Silvery flower (diploied) 3	0.109
	CNS0095613	Golden flower (tetraploid) 1	0.266
	CNS0095614	Golden flower (tetraploid) 2	0.260
	CNS0095615	Golden flower (tetraploid) 3	0.014
CRA001975	CRR073297	Stem 1	1.745
	CRR073298	Stem 2	1.283
	CRR073299	Stem 3	0.416
	CRR073300	Leaf 1	0.962
	CRR073301	Leaf 2	1.032
	CRR073302	Leaf 3	0.378
	CRR073303	Juvenile bud 1	0.126
	CRR073304	Juvenile bud 2	0.051
	CRR073305	Juvenile bud 3	0.145
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.127
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.171
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.170
	CRR073316	Gold flowering 2	0.361
	CRR073317	Gold flowering 3	0.073
	CRR073318	Tawny withering 1	0.618
	CRR073319	Tawny withering 2	0.580
	CRR073320	Tawny withering 3	0.304