Detail information of GWHGAAZE018987


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010657917.10PREDICTED: auxin response factor 1 isoform X2 [Vitis vinifera]
Swissprottr|Q8L7G0|ARFA_ARATH0Auxin response factor 1
trEMBLtr|D7TGL8|D7TGL8_VITVI0Auxin response factor {ECO:0000256|RuleBase:RU004561}
TAIR10AT1G59750.20auxin response factor 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene2827196628280312-
GWHAAZE00000005mRNA2827196628280312-
GWHAAZE00000005exon2828006928280312-
GWHAAZE00000005exon2827890828279374-
GWHAAZE00000005exon2827810228278214-
GWHAAZE00000005exon2827694628277041-
GWHAAZE00000005exon2827676328276819-
GWHAAZE00000005exon2827645528276607-
GWHAAZE00000005exon2827625028276334-
GWHAAZE00000005exon2827543928275544-
GWHAAZE00000005exon2827519728275361-
GWHAAZE00000005exon2827483228274951-
GWHAAZE00000005exon2827467128274746-
GWHAAZE00000005exon2827398428274152-
GWHAAZE00000005exon2827342028273904-
GWHAAZE00000005exon2827307228273174-
GWHAAZE00000005exon2827230228272341-
GWHAAZE00000005exon2827196628272146-
GWHAAZE00000005five_prime_UTR2828006928280312-
GWHAAZE00000005five_prime_UTR2827895428279374-
GWHAAZE00000005CDS2827890828278953-
GWHAAZE00000005CDS2827810228278214-
GWHAAZE00000005CDS2827694628277041-
GWHAAZE00000005CDS2827676328276819-
GWHAAZE00000005CDS2827645528276607-
GWHAAZE00000005CDS2827625028276334-
GWHAAZE00000005CDS2827543928275544-
GWHAAZE00000005CDS2827519728275361-
GWHAAZE00000005CDS2827483228274951-
GWHAAZE00000005CDS2827467128274746-
GWHAAZE00000005CDS2827398428274152-
GWHAAZE00000005CDS2827342028273904-
GWHAAZE00000005CDS2827307228273174-
GWHAAZE00000005CDS2827230228272341-
GWHAAZE00000005CDS2827196628272146-
Transcript Sequence

Network for GWHGAAZE018987

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02362.22B31262312.10E-19
PF06507.14Auxin_resp2573392.00E-32
PF02309.17AUX_IAA5505915.10E-06
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyB3-ARF

KEGG pathway

KO Enzyme pathway mapID
K14486K14486, ARF Plant hormone signal transduction map04075

Gene Ontology

GO term OntologyName
GO:0006355biological_processregulation of transcription, DNA-templated
GO:0009725biological_processresponse to hormone
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf43.475
SRR3591706second leaf18.932
SRR3591707mature leaf24.092
SRR3591708Shoot apex36.043
SRR3591709Stem52.642
SRR3591710White floral bud26.631
SRR3591711White flower49.077
SRR3591712Green floral bud16.654
SRR3591713Yellow flower37.921
SRP173429 SRR8316895Juvenile bud stage 16.842
SRR8316896Juvenile bud stage 19.978
SRR8316897Juvenile bud stage 11.010
SRR8316894Third green stage 10.025
SRR8316900Third green stage 14.187
SRR8316901Third green stage 14.831
SRR8316898Complete white stage 6.899
SRR8316899Complete white stage 26.559
SRR8316903Complete white stage 13.657
SRR8316902Silver flowering stage11.580
SRR8316904Silver flowering stage17.597
SRR8316905Silver flowering stage7.302
SRR8316906Gold flowering stage 24.005
SRR8316907Gold flowering stage 25.605
SRR8316908Gold flowering stage 24.971
SRP132670SRR6706286Control16.766
SRR6706287Light intensity 50%18.941
SRR6706288Light intensity 20%18.935
CNP0000432CNS0095592Slightly white alabastrum(diploid) 110.408
CNS0095593Slightly white alabastrum(diploid) 210.934
CNS0095594Slightly white alabastrum(diploid) 310.837
CNS0095595Whole white alabastrum(diploid) 29.063
CNS0095596Whole white alabastrum(diploid) 33.788
CNS0095597Whole white alabastrum(diploid) 48.587
CNS0095598Silvery flower (diploied) 126.234
CNS0095599Silvery flower (diploied) 218.139
CNS0095600Silvery flower (diploied) 328.877
CNS0095601Golden flower (diploid) 118.209
CNS0095602Golden flower (diploid) 229.204
CNS0095603Golden flower (diploid) 329.154
CNS0095604Slightly white alabastrum(tetraploid) 19.778
CNS0095605Slightly white alabastrum(tetraploid) 27.450
CNS0095606Slightly white alabastrum(tetraploid) 325.077
CNS0095607Whole white alabastrum(tetraploid) 16.734
CNS0095608Whole white alabastrum(tetraploid) 22.749
CNS0095609Whole white alabastrum(tetraploid) 310.684
CNS0095610Silvery flower (diploied) 137.255
CNS0095611Silvery flower (diploied) 231.131
CNS0095612Silvery flower (diploied) 328.094
CNS0095613Golden flower (tetraploid) 114.020
CNS0095614Golden flower (tetraploid) 226.474
CNS0095615Golden flower (tetraploid) 322.945
CRA001975CRR073297Stem 130.750
CRR073298Stem 225.445
CRR073299Stem 321.664
CRR073300Leaf 120.638
CRR073301Leaf 220.128
CRR073302Leaf 315.195
CRR073303Juvenile bud 116.486
CRR073304Juvenile bud 29.507
CRR073305Juvenile bud 323.480
CRR073306Third green 110.730
CRR073307Third green 28.842
CRR073308Third green 311.137
CRR073309Second white 112.460
CRR073310Second white 216.109
CRR073311Second white 316.943
CRR073312Silver flowering 114.727
CRR073313Silver flowering 218.693
CRR073314Silver flowering 318.842
CRR073315Gold flowering 110.871
CRR073316Gold flowering 218.232
CRR073317Gold flowering 310.982
CRR073318Tawny withering 116.248
CRR073319Tawny withering 216.884
CRR073320Tawny withering 320.862