Gene detail

Detail information of GWHGAAZE019041

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AEF79998.1	5.3927E-123	PHD finger family protein [Corylus heterophylla]
Swissprot	tr\|Q40359\|ALFIN_MEDSA	3E-117	PHD finger protein Alfin1
trEMBL	tr\|F6KVS6\|F6KVS6_9ROSI	2E-123	PHD finger family protein {ECO:0000313\|EMBL:AEF79998.1}
TAIR10	AT1G14510.1	3E-78	alfin-like 7

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	30644829	30654724	-
GWHAAZE00000005	mRNA	30644829	30654724	-
GWHAAZE00000005	exon	30654689	30654724	-
GWHAAZE00000005	exon	30654490	30654595	-
GWHAAZE00000005	exon	30654283	30654315	-
GWHAAZE00000005	exon	30648797	30649025	-
GWHAAZE00000005	exon	30645962	30646091	-
GWHAAZE00000005	exon	30644829	30645113	-
GWHAAZE00000005	CDS	30654689	30654724	-
GWHAAZE00000005	CDS	30654490	30654595	-
GWHAAZE00000005	CDS	30654283	30654315	-
GWHAAZE00000005	CDS	30648797	30649025	-
GWHAAZE00000005	CDS	30645962	30646091	-
GWHAAZE00000005	CDS	30644829	30645113	-

Transcript Sequence
>GWHTAAZE019063 ATGGACATAGATACTTATATGCTTGCATTTGTAATTGGGGTGAAGAAGAGAATGGATAGTTTACCTAATCCGAGGACAGTAGAGGAGGTGTTTGCTGATTTCAAAGGAAGAAGAGCTGGTGTGATTAAGGCCCTCACCACTGATGTTAGCAAATTTTATCAGCGGTGTGATCCTGAGAAAGAGAATTTGTGTCTTTATGGAATTCCAAATGAGACATGGGAAGTCAACCTGCCTGTTGAGGAGGTACCTCCGGAACTTCCTGAGCCAGCACTAGGAATAAACTTTGCTAGGGATGGGATGCAAGAGAAAGACTGGTTATCACTTGTTGCAGTCCACAGCGATACCTGGCTGCTTTCTGTTGCATTCTATTTTGGAGCGCGCTTCGGATTTGGTAGGAATGAAAGGAAGAGGCTATTTCAGATGATAAATGATCTCCCAACTGTATTTGAAGTTGTGACAGGAAAGGTTAATCCATCAAAGGACCAGCCTGCTACTAAGAAAAACGGAAACAAAAGCAAATCAAGTGGGAAGACGCAGTCTCGGTCATCAGAGCCCAAGGGAGCAAGAGCATTGCAGCCACCTACTGATCAAGATGACGAGACTGGTGAGGAGGAAGAAGACGGGGAAGAACAGGGAGCAGCCCTATGCGGAGCTTGTGGGGATAACGATGGTGAAGATCCCTTCTGGATTTGCTGCGATGTTTGTGAGAGGTGGTTCCACGGAAAATGTGTAAAGATAACACCTGCCAAAGCTGAGCATATCAAGCATTACAAGTGCCCTATTTGCACTAGCAACAAGAAGGCAAGACATCAGTTCTAA

Network for GWHGAAZE019041

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12165.9	Alfin	26	154	2.90E-68
PF00628.30	PHD	216	264	9.30E-10

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	Alfin-like

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0042393	molecular_function	histone binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	23.217
	SRR3591706	second leaf	31.002
	SRR3591707	mature leaf	38.924
	SRR3591708	Shoot apex	30.144
	SRR3591709	Stem	24.837
	SRR3591710	White floral bud	28.834
	SRR3591711	White flower	60.717
	SRR3591712	Green floral bud	30.727
	SRR3591713	Yellow flower	50.736
SRP173429	SRR8316895	Juvenile bud stage	27.442
	SRR8316896	Juvenile bud stage	34.280
	SRR8316897	Juvenile bud stage	20.965
	SRR8316894	Third green stage	14.434
	SRR8316900	Third green stage	41.072
	SRR8316901	Third green stage	40.064
	SRR8316898	Complete white stage	18.736
	SRR8316899	Complete white stage	59.128
	SRR8316903	Complete white stage	27.301
	SRR8316902	Silver flowering stage	17.812
	SRR8316904	Silver flowering stage	21.445
	SRR8316905	Silver flowering stage	12.489
	SRR8316906	Gold flowering stage	42.547
	SRR8316907	Gold flowering stage	38.000
	SRR8316908	Gold flowering stage	50.317
SRP132670	SRR6706286	Control	41.931
	SRR6706287	Light intensity 50%	39.205
	SRR6706288	Light intensity 20%	41.154
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	37.376
	CNS0095593	Slightly white alabastrum(diploid) 2	55.102
	CNS0095594	Slightly white alabastrum(diploid) 3	38.782
	CNS0095595	Whole white alabastrum(diploid) 2	38.851
	CNS0095596	Whole white alabastrum(diploid) 3	35.985
	CNS0095597	Whole white alabastrum(diploid) 4	32.645
	CNS0095598	Silvery flower (diploied) 1	36.528
	CNS0095599	Silvery flower (diploied) 2	36.418
	CNS0095600	Silvery flower (diploied) 3	44.903
	CNS0095601	Golden flower (diploid) 1	32.915
	CNS0095602	Golden flower (diploid) 2	38.470
	CNS0095603	Golden flower (diploid) 3	40.791
	CNS0095604	Slightly white alabastrum(tetraploid) 1	37.094
	CNS0095605	Slightly white alabastrum(tetraploid) 2	35.070
	CNS0095606	Slightly white alabastrum(tetraploid) 3	58.644
	CNS0095607	Whole white alabastrum(tetraploid) 1	24.385
	CNS0095608	Whole white alabastrum(tetraploid) 2	24.397
	CNS0095609	Whole white alabastrum(tetraploid) 3	39.056
	CNS0095610	Silvery flower (diploied) 1	53.053
	CNS0095611	Silvery flower (diploied) 2	47.201
	CNS0095612	Silvery flower (diploied) 3	41.308
	CNS0095613	Golden flower (tetraploid) 1	40.612
	CNS0095614	Golden flower (tetraploid) 2	43.859
	CNS0095615	Golden flower (tetraploid) 3	49.525
CRA001975	CRR073297	Stem 1	35.852
	CRR073298	Stem 2	36.580
	CRR073299	Stem 3	44.427
	CRR073300	Leaf 1	38.523
	CRR073301	Leaf 2	34.718
	CRR073302	Leaf 3	44.275
	CRR073303	Juvenile bud 1	39.665
	CRR073304	Juvenile bud 2	45.206
	CRR073305	Juvenile bud 3	41.119
	CRR073306	Third green 1	23.187
	CRR073307	Third green 2	23.873
	CRR073308	Third green 3	25.106
	CRR073309	Second white 1	32.610
	CRR073310	Second white 2	32.434
	CRR073311	Second white 3	23.738
	CRR073312	Silver flowering 1	24.557
	CRR073313	Silver flowering 2	34.072
	CRR073314	Silver flowering 3	24.700
	CRR073315	Gold flowering 1	43.871
	CRR073316	Gold flowering 2	53.486
	CRR073317	Gold flowering 3	41.859
	CRR073318	Tawny withering 1	36.908
	CRR073319	Tawny withering 2	42.171
	CRR073320	Tawny withering 3	29.031